Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq14742 556 2e-153 seq4468 86.0 8e-12 >seq14742 Length=52551 Score = 556 bits (616), Expect = 2e-153 Identities = 744/1021 (73%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 ||||| || || | || |||||||||||||| ||||||| |||||||||||| || Sbjct 38774 AGAGCATTACCACGAGGTAATACTTCTTCAGGGAATACAAGACGTTCATGTGGTTGGTCT 38715 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||||||||| || | || || || || ||||| || Sbjct 38714 TGCGCAGCCATCCAAGCACGGATACCTTCATTTAAAATAATATTTTTTGTGTAGAAAGTT 38655 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 ||||| || |||||||| ||||| | || ||||||||||| ||||||||||| | ||| Sbjct 38654 TCGAATTCCGGATCCTCAGCTGCACGAATTTCTTGTGAAACGAAGTCATAAGCACGTAAA 38595 Query 6442 GTTAAGTGCAAGACCAATAATACCAAT-GCTAGAGGTCCAAAGACCCATAACAGGAACAA 6500 |||| || | |||| | |||||| ||| || |||||||||| | ||||||||||| Sbjct 38594 TTTAAA-GCTAACCCAACTACACCAATAGCT-GACATCCAAAGACCTACAACAGGAACAA 38537 Query 6501 ACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACC 6560 ||||| ||||| || |||||||| ||||| ||| || | ||||| || ||||||| Sbjct 38536 GAAGCATGAAGAAGTGAAGCCAACGTTTATTTGAGAAAGCAACCCCAAAAATTTGAGACC 38477 Query 6561 AGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCT 6620 ||||||| || || || ||||| || || || || || ||||||| || | ||| || Sbjct 38476 AGAAACGGTTCGCTGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGGGTTAAATGCAC 38417 Query 6621 TGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAA 6680 ||| || || | |||||||||||||| || || || || |||||||||||||||| Sbjct 38416 GGAATGTGTTAGCACCGTCACCATCTTCAAATAATGTGTTTTCAACAGTAGCACCGTGAA 38357 Query 6681 TAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGA 6740 ||||||| | | || | ||||| | |||||||||||||||||| || || ||||| | Sbjct 38356 TAGCACATAATAGAGCAGCTCCTAAAACACCTGCTACACCCATCATGTGGAATGGGTTTA 38297 Query 6741 GCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAA 6800 |||||||| |||||||| || | || | | ||| ||||| || ||||| ||||||| Sbjct 38296 AAGTCCAGTTATGGAAGCCTTGGAAAAATAAAATGAAACGGAAAATAGCTGCTACACCAA 38237 Query 6801 ACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAA 6860 | || ||||| ||||| | || ||||| | || || || | || || || |||| Sbjct 38236 AACTAGGAGCAAAAAACCAGCCAGATTGTCCTAATGGGTAAATTAAGAAAACTGAAACAA 38177 Query 6861 AGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTG 6920 | || | ||| || | || || || || |||||||| ||||| | | ||| ||| | Sbjct 38176 AAACTGAAATAGGCGCCGAGAAAGCAATAGCATTGTATGGACGTAAATTAACTGAACGAG 38117 Query 6921 CGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAA 6980 | || ||||| || || | ||| || || || | | || | ||| || | || | || Sbjct 38116 CAATTTCAAATTGACGTAACATAAATCCAATTAAACCGAAAGATCCATGTAAAGCAATAA 38057 Query 6981 AAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCC 7040 | | |||||| || || | ||| ||| || || || || || ||||| || |||| Sbjct 38056 ATGTCCATAGACCACCTAATTGACACCAACGAGTAAAGTCACCTTGTGCTTCAGGTCCCC 37997 Query 7041 ATA-GAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGG 7099 ||| ||| || || || || | | | || ||||||||||| ||||| || || | | Sbjct 37996 ATAAGAATAA-TAAAGAGTGAGCCATACTGTTTGCAGGAGTTGAAACAGCTGCTGTTAAG 37938 Query 7100 AAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAA 7159 || ||||| || || | ||| |||||||| | || || |||||||| || || ||| Sbjct 37937 AAGTTACAACCTTCTAAATATGAAGAAGCTAAACCATGTGTGTACCATGATGTTACAAAA 37878 Query 7160 GTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCT 7219 ||||| || || | |||||| || ||||| | |||||| |||||| |||||||||||| Sbjct 37877 GTTGTACCAGTAAACCAACCTCCAAGTGCAAAATAAGCACAAGGGAAAAGAAGAAGACCT 37818 Query 7220 GACCAACCAACAAAAACGAACCTATCACG-CTTAAGCCAGTCATC-GAGTACATCAAACC 7277 |||||||| ||||| || || | || | | ||| ||||||||| | || ||||||||| Sbjct 37817 GACCAACCTACAAATACAAAACGGTCTTGACGTAA-CCAGTCATCTGCGT-CATCAAACC 37760 Query 7278 A 7278 | Sbjct 37759 A 37759 Score = 298 bits (330), Expect = 7e-76 Identities = 275/348 (79%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 7669 GAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAAC 7728 ||| ||||| | |||||||||||| || || ||| | |||||||||||| || ||||| Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 7729 AACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTG 7788 |||||||| || || | ||||||||| | ||||| ||||||||||| ||||||||||| Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 7789 GAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTG 7848 |||||| | ||| |||||||| || || ||||| || |||||||| || ||||||||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 7849 ACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGA 7908 |||||| || || || | ||| || || ||||| |||||||| | | ||| || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 7909 GGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCC 7968 ||||| | ||||| ||||| ||| ||| | ||||||||||| |||||||| || || Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 7969 CAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 | ||||||||| |||||||| || ||||||||||| |||||||| || Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 262 bits (290), Expect = 5e-65 Identities = 269/346 (78%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 8150 CGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCA-TAGATACCGAT 8208 |||||||||| ||||||||| | |||||| |||||||||||||| ||| | ||||| | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAA 11959 Query 8209 CAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGA 8268 | ||||||| | | | | |||| |||||||||||||||| | ||||||||| | ||| Sbjct 11960 GAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 12019 Query 8269 AGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGC 8328 | |||||||| || || ||||| || | |||||||||||| || | |||||||||||| Sbjct 12020 TGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGC 12079 Query 8329 ACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTC 8388 |||||||||||||||||| || || | | ||||||| || || ||||| || || || Sbjct 12080 ACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATC 12139 Query 8389 AATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCA 8447 || || || ||||| ||||||| |||||||| |||||| ||| | || ||| | | | Sbjct 12140 GATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGA-AGTAGCTGTTAATA 12198 Query 8448 GCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATT 8493 ||||| ||||| | |||||||||||||||| || | ||| || Sbjct 12199 ATGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTT 12244 Score = 145 bits (160), Expect = 9e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8020 CATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACC 8079 |||| ||||||| || |||||||| || | ||||||| | ||||||||||||||||| || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 8080 GAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACA 8139 || |||||||| || |||||| |||| || || ||||||||||||||||| |||||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 8140 GATCCAGGGACGCAT 8154 ||||| |||||||| Sbjct 10463 AATCCAAGGACGCAT 10477 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||| || | ||| | ||||||||||| ||||||||||||||||| |||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 || | ||||||||||| | ||||||||| ||||| | |||||||||||| ||| Sbjct 8204 CCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 8263 Query 7649 ATGATGGACTGGTTGAAGTTGA 7670 | | || ||||||||||||| Sbjct 8264 ACTACTGATTGGTTGAAGTTGA 8285 >seq4468 Length=619 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 31214 TCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAAGC 31273 |||||| || ||||||||||||| |||| | ||||||| ||||| | ||||||||| || Sbjct 233 TCGGGGAGAGAGGATTCGAACCTCCGGCCCCTGCCTCCCGAAGACAGTGCTCTACCAGGC 292 Query 31274 TGAGCTACACCCCGA 31288 |||||||| |||||| Sbjct 293 TGAGCTACTCCCCGA 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621998625314000