Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11139 109 7e-19 seq3654 105 8e-18 seq9587 100 3e-16 seq2367 89.7 6e-13 seq2890 84.2 3e-11 >seq11139 Length=1709 Score = 109 bits (120), Expect = 7e-19 Identities = 250/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || || ||||| || ||||| || || || ||| || | || |||||| || || Sbjct 545 CGGTCGAAGCGGCCCGGGCGCAGCAGCGCCGGGTCGAGCACGTCGGGGCGGTTGGTGGCG 486 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 ||||||| | ||||||| ||||| |||||||| |||||||| | ||| || Sbjct 485 GCGATGATGATGATGCCC---TCGTTGGCCTCGAAGCCGTCCATCTCGACGAGGAGCTGG 429 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACC 12877 |||| || || || || || || |||| | || | | | | | ||| || Sbjct 428 TTGAGCGTCTGCTCGCGCTCGTCGTTCGAGTTGCCGAGCCCGTGGCC-GCGCGAACGGCC 370 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 12937 |||||||| || ||||| ||||| ||||| || || || | ||| ||| || Sbjct 369 CACGGCGTCGATCTCGTCGATGAAGACGATGCAGGGCGCGTTCTTCTTGGCCTGTTCGAA 310 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 12997 || || ||||| | | || |||||||| || |||||||| || || | | | |||| Sbjct 309 CATGTCGCGCACACGGCTTGCGCCGACACCGACGAACATCTCGACGAAGTCCGAGCCGGA 250 Query 12998 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056 || | || |||||| ||| | |||||||||||||| |||||||| |||||||| | Sbjct 249 G-ATGGTGAAGAAGGGCACGCCCGCCTCACCCGCGATGGCGCGGGCGAGCAGGGTCTTGC 191 Query 13057 CCGTCCCTGG 13066 | || || || Sbjct 190 CGGTGCCGGG 181 >seq3654 Length=3311 Score = 105 bits (116), Expect = 8e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 ||||| || ||||| | ||||||||| ||| |||||| | ||| || | ||||| || Sbjct 1878 CCAATGCCTCCTGCACTCTTTGAGATGACTGCACACTCCTTAAGAGTGTCATAGATGCCG 1937 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 || || ||||||||| | ||| |||||||| || || |||||||| || ||| Sbjct 1938 TCAATGCTGTCACCCTTGCTGCAGATCAGGAAGCAACTGCTCAGCTGTGGCCTGGGGGTA 1997 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||||||||||||||| || | || ||| ||||| Sbjct 1998 CCAGCGTTGAAGAGGGTGGGGCTTGCATGGGTGAAC 2033 >seq9587 Length=1384 Score = 100 bits (110), Expect = 3e-16 Identities = 215/319 (67%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 10454 CCTCGGAGATGTTTGGTAAAGTT-AGGGAATCCCCACAAAATGAGGAGACGCCCTTCTAT 10512 ||||||||||||| || || || ||| || || || | ||| |||||||||||| Sbjct 560 CCTCGGAGATGTTCGGCAAGGTACAGGCCATACCG-CAGACCGAGACGACGCCCTTCTAC 502 Query 10513 CCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTATCGC 10572 || || | |||||||||| | ||| || || || ||| || | ||| || ||| Sbjct 501 CCGCGCAGCCCCTATGGCGTCGCCAAGCTTTACGCGCACTGGATCACGGTGAACTACCGC 442 Query 10573 GAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTCGT 10632 || ||| || |||| | || ||| || ||||||||||||||| || | || Sbjct 441 GAGAGCTACGGCATCTTCGGCAGCAGCGGCATCCTCTTCAACCACGAGAGCCCGCTGCGC 382 Query 10633 GGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTGGCGGGTGAG 10692 |||| || |||||||| ||||||||||| | || | ||| | || || Sbjct 381 GGCCGCGAATTCGTGACCCGCAAGATCACCGACAGCGTCGCCAAGATCAAGCTCGGCAAG 322 Query 10693 AGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGAC 10752 || | | | ||| | || || ||| | ||| || | |||||||| ||||||||| Sbjct 321 CTCGACTGCCTCGAACTCGGCAATCTCGATGCCAAGCGCGACTGGGGCTTCGCCAAGGAG 262 Query 10753 TATGTTGAAGCCATGTGGC 10771 ||||| || | |||||||| Sbjct 261 TATGTCGAGGGCATGTGGC 243 >seq2367 Length=7310 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 ||||||| |||||||| ||||| || | | || | || ||||||||||| Sbjct 362 AGGTGCTGGTTGACAACTGTGAACTCTCCAGACAACACACGGCGCACATAGATGTTGGAT 303 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| |||||||||||||| ||||| |||| ||| ||| ||| |||||||||||| Sbjct 302 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCTGTGGGCATC 243 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || || | || || |||||||| ||| Sbjct 242 GGGGCAACAAGCAGTGAGTTGCGGACACC 214 >seq2890 Length=3432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 276/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 12657 ATCTTCTCGCGTCCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 12715 ||||||||||| ||| || | |||| || ||| ||||| || || ||||| || Sbjct 1483 ATCTTCTCGCGGCCGGCGACGTCGGGGTTCGG-CACCACGATCTGGCGGTCGAAGCGGCC 1541 Query 12716 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 12775 || || || || || ||| || | || ||||| ||||| ||||||| | || Sbjct 1542 CGGACGCAGCAGCGCCGGGTCGAGCACGTCGGGCCGGTTGGTCGCGGCGATGATGATGAC 1601 Query 12776 GCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 12832 |||| ||||| |||||||| |||||||| | || || || | || || || Sbjct 1602 GCCC---TCGTTGGCCTCGAAGCCGTCCATCTCCACGAGCAGCTGGTTCAGCGTCTGCTC 1658 Query 12833 ACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTT 12891 || || || || || || | || |||| ||| || ||||||||||| || | Sbjct 1659 GCGCTCGTCGTTGCCGCCGCCGAGG-CCGGCACCGCGATGGCGGCCGACGGCGTCGATCT 1717 Query 12892 CGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCAAAGATATCTCGCACT 12950 |||| ||||| | ||| || ||| | | ||| | | | || || || || ||||| Sbjct 1718 CGTCGATGAAGATGATGCAGGGTGCGTTCTTCTTCGCCTGC-TCGAACATGTCGCGCACG 1776 Query 12951 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 13009 | ||| ||||| || || |||||||| || || | || | ||| | || | || ||| Sbjct 1777 CGGGAGGCGCCGACGCCGACGAACATCTCGACGAAGTCGGAGCCGG-AGATGGTGAAGAA 1835 Query 13010 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || ||||||| || || || | || |||||| || ||||| || || || || Sbjct 1836 CGGCACGTTGGCCTCGCCGGCAACCGCGCGGGCGGTCAGCGTCTTGCCGGTGCCGGG 1892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613382773071000