Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14182 147 5e-30 seq334 114 3e-20 seq11472 107 5e-18 seq10818 86.0 1e-11 >seq14182 Length=2243 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || |||||||| |||| ||||||||| |||| ||| | ||||||||| Sbjct 583 ACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATCTTCC 642 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| ||||||||||| |||||||||||||| ||| ||| || || |||||| Sbjct 643 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 702 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| || || | |||||| | | || || |||| ||||| ||||| Sbjct 703 ATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGTCTTG 762 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| Sbjct 763 CCAGTCAGTGTCTTGACAAAGATTTG 788 Score = 105 bits (116), Expect = 2e-17 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| || |||||||| |||| ||||||||| || | || | ||||||||| Sbjct 1331 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCATCTTCC 1390 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||||||| || |||||||| |||||||||||||| || Sbjct 1391 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 1428 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| || |||||||| |||| ||||||||| || | || Sbjct 1851 CGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTG 1910 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||||||||||||||| || || ||||| |||||||||||||| || Sbjct 1911 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 1960 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| || |||||||| || | ||||||||| || | || Sbjct 799 CGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCTAGGGTG 858 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | |||||||| |||||||| |||||||| || |||||||||||||| || Sbjct 859 CGGCCATCTTCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGG 908 >seq334 Length=28022 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || |||||||| |||| ||||||||| |||| || | ||||| ||| Sbjct 27851 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCC 27792 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| |||||||||||||| || || || || |||||| Sbjct 27791 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 27732 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| || || | ||| || | | || || |||| ||||| ||||| Sbjct 27731 ATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATGGTCTTG 27672 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| Sbjct 27671 CCAGTCAGTGTCTTGACAAAGATTTG 27646 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| || |||||||| |||| ||||||||| || | ||| Sbjct 27635 CGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTG 27576 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||||||||||||||| || |||||||| ||||| |||||||| || Sbjct 27575 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGG 27526 >seq11472 Length=8128 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || |||||||| |||| ||||||||| || | || Sbjct 5152 CGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTG 5093 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||||| |||||||||||||| ||| ||| ||| Sbjct 5092 CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATCCCT 5033 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 5032 TCCTTATCCTGGATCTT 5016 Score = 100 bits (110), Expect = 7e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || |||||||| |||| ||||||||| || | ||| Sbjct 6516 CGCAGACGCAGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTG 6457 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| |||||||||||||| ||| ||| ||| Sbjct 6456 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCT 6397 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || |||||||| |||| ||||||||| || | ||| | ||||| ||| Sbjct 6934 ACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGACCATCCTCC 6875 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || ||||| |||||||||||||| ||| ||| ||| Sbjct 6874 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCT 6827 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || |||||||| |||| ||||||||| || | || Sbjct 6053 CGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTG 5994 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| |||||||||||||| ||| ||| ||| Sbjct 5993 CGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCT 5934 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || |||||||| |||| ||||||||| || | || Sbjct 7533 CGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTG 7474 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||||||||||||||| || || ||||| |||||||||||||| || Sbjct 7473 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 7424 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || |||||||| |||| ||| ||||| || | ||| Sbjct 5592 CGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGAGTG 5533 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||| ||||||||||| || || ||||| | |||||||||||| ||| Sbjct 5532 CGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGA 5482 >seq10818 Length=5054 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| |||| |||||| || || ||||| ||||| ||||| |||| Sbjct 4630 CCTTCTGGATGTTGTAGTCGGCCAGAGTCCTGCCGTCCTCCAGTTGCTTACCGGCAAAGA 4689 Query 199500 TGAGACGCTGCTGGTCCGGA 199519 | ||||||||||| || ||| Sbjct 4690 TCAGACGCTGCTGATCAGGA 4709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178676522462075