Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq14182 168 8e-37 seq334 149 7e-31 seq11472 113 5e-20 seq7244 111 2e-19 >seq14182 Length=2243 Score = 168 bits (186), Expect = 8e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||||||||| ||| |||||| ||||| |||||||| | |||||||| | Sbjct 576 ACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCC 635 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| ||||||||||| | || | | |||||| Sbjct 636 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTT 695 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| |||||| || | | |||||||| ||||| |||| ||||| Sbjct 696 GTCCTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGAT 755 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || |||||||||||||| Sbjct 756 GGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | |||| |||||| || || |||||||| | ||| ||||| | Sbjct 805 CGCAGCACCAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCTAGGGTGCGGCCA 864 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| ||||||||||| Sbjct 865 TCTTCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 905 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| || | |||| |||||| ||||| |||||||| | ||| ||||| | Sbjct 1325 CGCAACACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCA 1384 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| ||||||||||| Sbjct 1385 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 1425 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | |||| |||||| ||||| |||||||| | ||| ||||| | Sbjct 1857 CGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCA 1916 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| ||||||||||| Sbjct 1917 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 1957 >seq334 Length=28022 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||||||| | ||| |||||| ||||| |||||||| | || ||||| | Sbjct 27857 CGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA 27798 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| ||||||||||| | || | | ||||||| Sbjct 27797 TCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 27738 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| |||||| || | | || ||||| ||||| |||| |||||| Sbjct 27737 TCCTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATG 27678 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||||||||| Sbjct 27677 GTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | |||| |||||| ||||| |||||||| | ||||||||| | Sbjct 27629 CGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTGCGGCCA 27570 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| || |||||||| Sbjct 27569 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTC 27529 >seq11472 Length=8128 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||||||||||| || |||||| ||||| |||||||| | Sbjct 5160 TGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG 5101 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| ||||| |||| ||||||||||| | | Sbjct 5100 CAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 5041 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| ||| |||||| |||| | || | | |||||||| || |||| Sbjct 5040 GAATCCCTTCCTTATCCTGGATCTTGCTCTTTACATTCTCAATGGTGTCGCTAGACTCCA 4981 Query 46545 CATCCACCGTGA 46556 | | || |||| Sbjct 4980 CCTACAGTGTGA 4969 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||||||||| ||| |||||| ||||| |||||||| | Sbjct 6952 CCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCA 6893 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| | || || ||||||||||| || || |||| ||||||||||| Sbjct 6892 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 6840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||||||||||| || |||||| ||||| || ||||| | Sbjct 5600 TGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTG 5541 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| | || || ||||||||||| || || ||||| ||||||||||| Sbjct 5540 CAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTC 5486 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||||||||| ||| |||||| ||||| |||||||| | Sbjct 6524 TGCCTCCACGCAGACGCAGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 6465 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| | || || ||||||||||| || || |||| ||||||||||| Sbjct 6464 CAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 6410 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||||||||||| || |||||| ||||| |||||||| | Sbjct 6061 TGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG 6002 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| | || || ||||||||||| || || |||| ||||||||||| Sbjct 6001 CAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 5947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||||||||||| ||| |||||| ||||| |||||||| | Sbjct 7539 CCTCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCA 7480 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| | || || ||||||||||| || || |||| ||||||||||| Sbjct 7479 AGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 7427 >seq7244 Length=2690 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 46373 CTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTG 46432 |||||||||| || |||||||| ||| |||||| ||||| || ||||| | || ||| Sbjct 604 CTTAAACGCAGTACAAGATGCAAGGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGTG 663 Query 46433 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTC 46492 || | || || |||||||||||||| ||||||||||| ||||| || | || | || | Sbjct 664 CGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAAGCGTTGCTGATCCGGTGGGATGCCC 723 Query 46493 TCCTTGTCC 46501 ||||||||| Sbjct 724 TCCTTGTCC 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565123762587000