Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14182 118 1e-21 seq334 107 2e-18 seq11472 104 2e-17 seq11470 86.0 6e-12 >seq14182 Length=2243 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| || | Sbjct 791 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACACTGGAGGTGGAGAGCAGC 732 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || || | ||||| ||||| ||||| | |||| Sbjct 731 GACACCATTGAGAATG--TCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACC 674 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 673 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGGCAGACTACA 614 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || |||||| |||| ||||| || | || |||| Sbjct 613 ACATCCAGAAGGAGTCCACACTGCATCTGGTATTGCGTCTGCGTGGTGGCC 563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || |||| ||| ||||| ||||| || || | ||| Sbjct 917 GGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTAGAAGATGGCCGC 858 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||| || ||||| | || || ||| |||||||||| || | Sbjct 857 ACCCTAGCAGACTACAACATTCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 798 Query 38466 GGCGGC 38471 || ||| Sbjct 797 GGTGGC 792 >seq334 Length=28022 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| || | Sbjct 27643 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCAGC 27702 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || || | ||||| ||||| || ||| | |||| Sbjct 27703 GATACCATTGAGAATG--TCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACC 27760 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | |||||||| ||||||| Sbjct 27761 AGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACA 27820 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | || || ||| ||||| |||| || | || ||| Sbjct 27821 ACATCCAGAAGGAGTCCACACTTCATCTGGTGTTGCGCCTGCGCGGTGGC 27870 >seq11472 Length=8128 Score = 104 bits (114), Expect = 2e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 38321 TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||||| || |||| || || || || ||||| | ||||| ||||| || || | || Sbjct 5008 TAAAGAGCAAGATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAGCGTCTGATCTTCG 5067 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| |||||||| || | |||||||| |||||||||||||| ||||| | | Sbjct 5068 CTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCAGACTACAACATCCAGAAGGAGTCCA 5127 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | |||||| ||||||||||| || | || ||| Sbjct 5128 CCCTGCATCTGGTGCTGCGTCTGCGTGGAGGC 5159 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 5935 GGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGC 5994 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | || |||||| ||||||||||| || | Sbjct 5995 ACCCTTGCAGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTGCGT 6054 Query 38466 GGCGGC 38471 || ||| Sbjct 6055 GGAGGC 6060 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 7415 GGTATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 7474 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| | || |||||| ||||||||||| || | Sbjct 7475 ACACTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGTCTGCGT 7534 Query 38466 GGCGG 38470 || || Sbjct 7535 GGAGG 7539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 6398 GGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 6457 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| | || |||||| |||| |||||| || | Sbjct 6458 ACTCTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTACTGCGTCTGCGT 6517 Query 38466 GGCGGC 38471 || ||| Sbjct 6518 GGAGGC 6523 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 6828 GGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGC 6887 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| | || |||||| ||||| ||||| || | Sbjct 6888 ACTCTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGTTGCGTCTGCGT 6947 Query 38466 GGCGG 38470 || || Sbjct 6948 GGAGG 6952 >seq11470 Length=8557 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 132893 AGCA-AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 |||| ||||||||| ||||| ||| | || ||| ||| | |||||||||||| ||| Sbjct 3639 AGCACAGCAAAGTCCGTGTGCAACCCCCCATCTCTGCTAATCAATTCGTTGCTGAATGTC 3698 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 ||||| ||||| | ||| || || |||||||| || || ||| ||| ||||| ||| Sbjct 3699 AAGCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATAGCGCAGAAGCTGCCACTGAAG 3758 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 | ||| || ||| || || || | |||||||| Sbjct 3759 TGAATGCCTTCTACGCAAGCAAAGGCAAGCAGGCGCT 3795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500071358704000