Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10372 104 3e-17 seq7166 89.7 7e-13 seq6643 87.8 2e-12 >seq10372 Length=14068 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 16/229 (7%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || ||||||| ||| || || || || || ||||| || ||||||||||| Sbjct 13693 TCAAAGTCCTCTCCACCCAGGTGAGTGTCACCGGCAGTGGCTTTCACCTCAAAGATACCG 13752 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || |||||||| ||||| || ||||||||||| || || || Sbjct 13753 TCATCAATGCTCAGTAGTGACACATCAAAGGTACCTCCTCCCAGGTCAAAGATCAGCACA 13812 Query 7577 TTCGTATCGTCGTCTT--------TG-----TTCTTATCGAGACCGTACGCGATAGCCGC 7623 || || | || || || ||||| || ||||| || ||||| || || Sbjct 13813 TTGCGCTCAT-GTGTTGAACCACCTGACGCCTTCTTGTCAAGACCATAGGCGATGGCTGC 13871 Query 7624 CGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGT 7671 ||||| || ||||| || ||||| ||||| | |||||| ||||| || Sbjct 13872 AGCCGTGGGCTCATTGATGATACGCAAGAC-TTCCAGGCCGGCAATTGT 13919 >seq7166 Length=13356 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCA 7666 |||| |||| ||||||||||| || || || || || || || || || ||||| || Sbjct 13356 CGTAGGCGAGCGCCGCCGCCGTGGGCTCGTTGATGATGCGCAG-CACCTCGAGGCCGGCG 13298 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || | ||||| |||||||| || || || ||||| || |||||||| || || Sbjct 13297 ATCTTTCCGGCATCCTTCGTCGCCTGGCGCTGGCTGTCGTTGAAATAGGCCGGCACGGTG 13238 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 | ||||| | || ||||| | |||||||| | |||||| | || ||||| || Sbjct 13237 ATCACCGCCTGGGTCACTTTTTCGCCGAGATAGGCTTCCGCCGTCTCCTTCATCTT 13182 >seq6643 Length=7041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 |||||| ||||| ||||| |||| |||||||| || ||||| || || || || || || Sbjct 5689 GTTCTTGTCGAGGCCGTAGGCGAGCGCCGCCGCGGTGGGTTCGTTGATGATGCGCAG-CA 5747 Query 7654 GTTC-AGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 || ||||| ||||| |||||| | || || || || || || || | ||||| ||| Sbjct 5748 CCTCGAGGCCGGCAATC-TTGCCGGCGTCCTTGGTGGCCTGGCGCTGGGCGTCGTTGAAG 5806 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 |||||||| || || | |||||| | ||| | | ||||| || | || || | Sbjct 5807 TAGGCCGGCACGGTGATGACCGCCTGGTCGACCGTGGTGCCGAGGTAGGCCTCGGCCGTC 5866 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCT 7805 || ||||| || || ||||||| || |||| Sbjct 5867 TCCTTCATCTTCTGCAGCACCATCGCCGAGATCT 5900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635003987129000