Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3169 98.7 1e-15 seq2692 95.1 2e-14 seq11139 93.3 5e-14 seq9217 86.0 8e-12 seq3654 86.0 8e-12 seq9432 82.4 9e-11 >seq3169 Length=13646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 || ||||| || | |||| || ||| || | | ||||| || ||||||||||||| Sbjct 10667 TTTGTTGCTGCCAGCACAATAACACCGGTGTTGCCCTCAAATCCGTCCATCTCTGTCAGC 10726 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC-ACCAGCACTGCGTTG 16054 |||||||| || || || |||| ||||| || || || | |||||||| || || Sbjct 10727 AGCTGGTTGATGGTCTGCTCCCTCTCATCGTTGCCTC-CACCCAGACCAGCACCACGCTG 10785 Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 ||||| |||||||||||||||||||||| |||||| ||| Sbjct 10786 ACGACCCACAGCATCAATCTCATCAATGAAGATGATGCAGGGT 10828 >seq2692 Length=17539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 248/377 (66%), Gaps = 15/377 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| | || || || || || || | ||| | | |||| || ||||| ||| Sbjct 12380 CGGTCAAACCTGCCGGGCCGGAGCAGAGCTTGATCCAACACATCAGGCCGGTTCGTGGCG 12439 Query 15945 GCGATG------ACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGC 15998 |||||| || ||| | || | ||| | ||||| ||||||| |||||||| ||| Sbjct 12440 GCGATGCAGATGACCACATTGTCTTTGTCGCTGTCAAACCCATCCAGCTCTGTCAGGAGC 12499 Query 15999 TGGTTAATAGTTTGTTCCCGTTCATCATT-----CGCTG-GCATACCACCAGCACTGCGT 16052 || || | || || ||||| |||||||| |||| ||| || | | |||| | Sbjct 12500 TGATTCAGCGTCTGCTCCCGCTCATCATTGCCAACGCTCCGCAAACGCATATCTCTGCCT 12559 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 | | | || ||||||||||| || |||||||||||| || | | ||| || Sbjct 12560 T---TGGCAACTGCATCAATCTCGTCGATGAAGACGATGGCAGGAGCTTCCTTGCGGGCA 12616 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 |||| | || || || ||| ||||||||| ||||| | | ||||||||| | Sbjct 12617 TTGGCAAACAACTCACGCACCCGCATGGCGCCCATGCCAACGTAAAGCTCCACAAACTCG 12676 Query 16173 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 ||| || || |||||| |||| | ||| || || | ||||| || | | Sbjct 12677 CTGGCTGATATGCTGAAGAAGGGCACATCCGCTTCGCCAGCGACTGCTCGTGCTAACAAG 12736 Query 16233 GTCTTACCCGTACCTGG 16249 || ||||| ||||| || Sbjct 12737 GTTTTACCAGTACCAGG 12753 >seq11139 Length=1709 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGG-TTGATTTTCGCGAGCGACTTC 16117 |||||||| || ||||| || |||||||||||||| || | | ||| | || ||| Sbjct 371 CCCACGGCGTCGATCTCGTCGATGAAGACGATGCAGGGCGCGTTCTTCTTG-GCCTGTTC 313 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 || | || || ||||| | ||||| ||||| || |||||||| || |||| | | | Sbjct 312 GAACATGTCGCGCACACGGCTTGCGCCGACACCGACGAACATCTCGACGAAGTCCGAGCC 253 Query 16178 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 || | || | || |||||| || | |||||||| ||||| |||||||| || |||| Sbjct 252 GG-AGATGGTGAAGAAGGGCACGCCCGCCTCACCCGCGATGGCGCGGGCGAGCAGGGTCT 194 Query 16237 TACCCGTACCTGGC 16250 | || || || ||| Sbjct 193 TGCCGGTGCCGGGC 180 >seq9217 Length=12379 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||||||||| || || | || || ||| ||||| || | | || ||||| || Sbjct 5607 TCAAAGCGACCAGGACGTAACAGAGCAGGATCCAGGATGTCTGCCCTGTTGGTTGCTGCA 5666 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| |||||| || | | || || ||||||||||||||||| |||||||| | Sbjct 5667 ATCACAATAATACCGGTGTTGCCCTCGAAGCCATCCATCTCTGTCAACAGCTGGTTCAGG 5726 Query 16008 GTTTGTTCCCGTTCATCATT 16027 || || || || |||||||| Sbjct 5727 GTCTGCTCACGCTCATCATT 5746 >seq3654 Length=3311 Score = 86.0 bits (94), Expect = 8e-12 Identities = 170/249 (68%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || | || |||||| | | ||||| ||| | Sbjct 2125 CCTCAGCACATGCTCATGCGTGTTGCCCTTGGCATCCATATGCGCAACCTTGATGCTGCT 2066 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 || | || ||| || | |||| | ||||| ||| |||| || ||||||||| Sbjct 2065 GTGCAAACCTACCACTTGCTGTCTGAGCGCTGGTTCACCCATGCAAGCCCCACCCTCTTC 2006 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTAT-TGCAAACAAGGAGGA 111790 ||||||||||| || || || || || |||||| ||||| || ||| | ||||| || Sbjct 2005 AACGCTGGTACCCCCAGGCCACAGCTGAGCAGTTGCTTCCTGATCTGC-AGCAAGGGTGA 1947 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | ||||| || | |||||| | || ||||| ||||||||| | || || Sbjct 1946 CAGCATTGACGGCATCTATGACACTCTTAAGGAGTGTGCAGTCATCTCAAAGAGTGCAGG 1887 Query 111851 TGGTATCGG 111859 || || || Sbjct 1886 AGGCATTGG 1878 >seq9432 Length=2999 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/191 (71%), Gaps = 14/191 (7%) Strand=Plus/Plus Query 16057 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGC-- 16111 |||| | ||||||||||||||||||||||| ||||| ||| ||| | ||| || Sbjct 1443 TTCCAATGGCATCAATCTCATCAATGAAGATGATGCTAGGTGCCTGACT---GCGGGCCT 1499 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAG 16169 ||| |||| || |||| ||| |||| | |||||||| ||||||||||||| ||| Sbjct 1500 GAC--CAAACAGGTCCC--TCACTCTTGCAGGACCCACACCCACAAACATCTCCATGAAG 1555 Query 16170 TTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 16229 | || | || | |||||||||| || |||||| || |||| ||| || Sbjct 1556 TCTGAACCAGAGATGCTCAGGAAGGGGACACCAGCTTCACCAGCTGTGGCCTTGGCAAGC 1615 Query 16230 AGAGTCTTACC 16240 |||||||| || Sbjct 1616 AGAGTCTTGCC 1626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620616505682000