Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3654 131 2e-25 seq14687 84.2 3e-11 >seq3654 Length=3311 Score = 131 bits (144), Expect = 2e-25 Identities = 200/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 ||||| || || || | ||||||||| ||||||||| ||||||| ||||||| ||| Sbjct 1878 CCAATGCCTCCTGCACTCTTTGAGATGACTGCACACTCCTTAAGAGTGTCATAGATGCCG 1937 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | || ||| ||||| || ||| |||||||||||| || ||| || || || ||| Sbjct 1938 TCAATGCTGTCACCCTTGCTGCAGATCAGGAAGCAACTGCTCAGCTGTGGCCTGGGGGTA 1997 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 ||||| ||||||||||| || |||| || ||||| | | |||| | || ||| Sbjct 1998 CCAGCGTTGAAGAGGGTGGGGCTTGCATGGGTGAACCAGCGCTCAGACAGCAAGTGGTAG 2057 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 || | || ||| ||||| || | |||||||| | ||| |||||||| | |||| Sbjct 2058 GTTTGCACAGCAGCATCAAGGTTGCGCATATGGATGCCAAGGGCAACACGCATGAGCATG 2117 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 | || || || |||| |||||| || | | |||||||| Sbjct 2118 TGCTGAGGACGCTCGATGACTTTGCCATTGATTCTTAGAAGATAG 2162 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-T 106506 ||| || ||| ||||| || |||||||| ||||| || || |||||||| | ||| | Sbjct 902 ACAAACCGTGGTAGGGCAATGGATGCCAAGTTGCACACCGCAGTCTCATC-TGGGCTGGT 960 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | ||| || || |||| |||| | ||| || || |||| |||| ||||| Sbjct 961 GTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTT 1020 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 || || |||||| ||||||||||| ||||||||||| | || || || |||||| Sbjct 1021 GCTTTTGCGGTTGCAAGCATCCTTGTACAGCATGTAGGGGTTTCCTGTTTCAATCTGTGC 1080 Query 106627 CTTGAGAA 106634 || |||| Sbjct 1081 CTCAAGAA 1088 >seq14687 Length=9822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 136163 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 136222 ||||| |||||||||||||| ||||| ||||||||||||||||| || | ||||||| Sbjct 9529 AGCTCCTATAGTGTAGTGGTGATCACGTTGGACTTTGAATCCAAAGACTCCAGTTCAAAC 9470 Query 136223 CCAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 9469 CTGGGTAGGAGCTT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589861144519000