Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq14319 183 7e-42 seq8309 159 8e-35 seq6368 107 5e-19 >seq14319 Length=508 Score = 183 bits (202), Expect = 7e-42 Identities = 344/504 (68%), Gaps = 25/504 (5%) Strand=Plus/Plus Query 32533 GCGACGCTGTACTTCCTCGGCACCAACGCGCGCACTGCGCAGAGCTACCACGGCAACCTG 32592 ||||| | |||||||| ||||| ||||| || || |||||| |||| |||||||| | Sbjct 22 GCGACCATCTACTTCCTGGGCACGAACGCCCGGACGGCGCAGGGCTATCACGGCAATTTC 81 Query 32593 TATTTCGACGAGTACTTCTGGGTGCCGCGCTTCCAGGAGCTGCGCAAGGTCGCCTCCGGC 32652 || |||||||||| ||||||| || ||| | || ||| ||||||||||| Sbjct 82 TACTTCGACGAGTTCTTCTGGACCTTCCGGTTCAACGACCTGAATAAGGTCGCCTCGATG 141 Query 32653 ATGGCGATTCACGACCAGTGGCGGCAGACGTATTTCTCGACGCCGTCGAGCCTCGCGCAC 32712 ||||| ||| | |||||||| | || ||| | ||| |||| ||| | |||| Sbjct 142 ATGGCCGCCCACAAGAAGTGGCGGAAAACCTATCTGTCGTCGCCCAGCAGCGTGATGCAC 201 Query 32713 GACGCTTATCCGTTCTGGTCGGGCAAGCTGTTCAACCGTGGCCGACCGAAAGATCAGCA- 32771 || || ||| |||||| | ||| | | ||||| | || ||||| || || | Sbjct 202 GAGGCCTATGGCTTCTGGACCGGCGACAACTGGAACCGGCGGCGGCCGAAGGACGAGAAG 261 Query 32772 CGTATCGATCGACATTTCGCACGCGGCGCTGGCCG-CGGGCCGTTCGTGTCAGGACGGCC 32830 || || ||||| | |||||||||||| |||| || ||| | | || | Sbjct 262 CGGGTCT-TCGACGTCAGCCACGCGGCGCTGAAGAACGGGGCGCTCGGGCC----CGACA 316 Query 32831 AG---TGGCGCCAGATCGTCACGGTCGAGGACGCCGTGCGCGGCGGTTGCAACAGCGGGG 32887 || | || || | | ||| ||||||| || | | ||||||||| || Sbjct 317 AGATCTTCCGGCATGTGCTGACGATCGAGGATGCGGAGGCGGGCGGTTGCGAC------- 369 Query 32888 CGCGGCCGCTCTTCAATCTCGACCGGCTACGACTGGAATACAGCCCCGAGGAATACGCGA 32947 |||||| | ||||| ||| || | ||| ||| | || || || | ||| | Sbjct 370 --------CTCTTCGACATCGACGAGCTGCGCCAGGAGTACGGGCCGGACGAGTTCGCCA 421 Query 32948 ACCTGCTGCTGTGCCAGTTCATCGACGATTCGCTGTCGGTTTTCCCGCTGACGGTGTTGC 33007 |||||||| |||||||||||||||||||| ||| |||||| ||||||||| || || ||| Sbjct 422 ACCTGCTGATGTGCCAGTTCATCGACGATGCGCAGTCGGTGTTCCCGCTGGCGATGCTGC 481 Query 33008 AGCCGTGCATGGTCGATACCTGGG 33031 |||| |||||| ||||| |||||| Sbjct 482 AGCCCTGCATGATCGATTCCTGGG 505 >seq8309 Length=800 Score = 159 bits (176), Expect = 8e-35 Identities = 312/458 (68%), Gaps = 5/458 (1%) Strand=Plus/Minus Query 15848 GTTCGCGCCCGGATCGAACCAGCATTCGCCGTCGATCAGGTAGCCGGCGGTCTTCCACGC 15907 |||| | ||||||| | |||| |||||| | | | |||||| | |||| | Sbjct 796 GTTCCGGGCCGGATCAAGCCAGGCCTCGCCGCCCAGGATGTAGCCCTGGACCTTCAGCTG 737 Query 15908 GCGGAACTTCGCATTCACGCCATCGACGATGTCGCGCATCAGCGTGCGGCTCATCGGCTG 15967 ||||||||| || || | | |||| |||||||||| ||| || | ||| ||||| Sbjct 736 GCGGAACTTGGCGTTGATGGTCTCGATGATGTCGCGCGCCAGGCTGGGCGTCAGCGGCTT 677 Query 15968 GTCGACGGCCCACATG-TGCGCCTCGGCCATCGTGTCGGCGATCACCTGCGCACTGCGCA 16026 |||||| |||||||| ||| ||||||| || ||||| || | | || |||| Sbjct 676 GTCGACCGCCCACATCATGC-CCTCGGCGATGGTGTCCTTGAGGATGTCGGCGGTGCGGG 618 Query 16027 CATAGTTCTCGAACGCCCACAGCTTGTCCTCGGAACAGGTGCGCGATCCCCATAGACGGT 16086 | | | |||||| | | || || || ||||| | ||||| | ||| Sbjct 617 CGGCGCTTTCGAACTGGAAGGCCGGCTCGTCAGAGCAGGTCTGGTTGCCCCAGAAGCGGA 558 Query 16087 AACCGTCCGCGTTCACCAGCGTGGTCACTTCGTGGCTGTTCAGGTAGCCCGCGTCGGTGT 16146 | |||| | | | ||||| ||| || || | ||||||| ||| |||||||| Sbjct 557 AGCCGTTCTGGCGGATCAGCGCGGTGACGCCGGCGGCGTTCAGGACGCCGGCGTCGGTCG 498 Query 16147 TCGGGTCCTGCAGGTCCCAGAACACGTCGCGGCTGATGCCCGTGACGCCGTTGACCACGA 16206 |||||||||||| | || | | |||| | | ||| ||||||||||||| ||| Sbjct 497 AGGGGTCCTGCAGGGCGAAGCTGATCTTGCGGGTCAGGCCGACGACGCCGTTGACCGCGA 438 Query 16207 CGTTCGAGATCGTCTTGTGCCAGCCGATCTCTTCGTCGATCTTCGCGCGCATGCCGAGCG 16266 |||| |||||||||||||||||||||| || ||||||| ||| ||||||| ||||| | Sbjct 437 CGTTGGAGATCGTCTTGTGCCAGCCGACTTCCTCGTCGAGCTTGGCGCGCAGGCCGACGG 378 Query 16267 CGCGCGCCGTTGC---CCACGTGATGTCCTCGGCGTTG 16301 || ||||| || ||| |||||| | ||| || || Sbjct 377 CGACCGCCGCGGCCGGCCAGGTGATGACATCGCCGGTG 340 >seq6368 Length=557 Score = 107 bits (118), Expect = 5e-19 Identities = 191/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 29903 TCCTCGATCACGTACGCATCGTTCGAGCTTTCGAAGTTCTCGATGCGATCGCGCTTCGGG 29962 ||||||| ||||| | ||||||||| || ||||||||| ||| || ||||| | | Sbjct 22 TCCTCGAGGACGTAGCCGTCGTTCGAGGACTCATAGTTCTCGACGCGGTCCCGCTTGGCG 81 Query 29963 TTGTCGATGAGCGCGCGACGGCGCGCACCGATTTGCCAGTACAGCGACAGGTTGTCCAGG 30022 ||||||| || || ||| || ||| ||| || |||| | ||| |||||||||||| Sbjct 82 TTGTCGACGATCGTGCGGCGACGCTTGCCGTCCTGGTAGTAGATCGAGAGGTTGTCCAGG 141 Query 30023 CGCGTGATCATCAGCGCGCGCGGGGGGAAGTACGGCACGCGCACGGCCGGCAGATTGCCG 30082 || ||||||| | || || | |||||||| || || | || || || |||||| Sbjct 142 CGGGTGATCAGGATCGAGCCGGTCGGGAAGTAGGGGACCTGGGCGACCTGC---TTGCCG 198 Query 30083 ATGCGCTTCTGCGCCGTG-----ATGACGTCCGCGGCGAGCGCTTCGGTCGGCGGCTGAT 30137 ||| |||||| | | || ||| ||||||| | |||||||||| || | Sbjct 199 CCCAGCT--GGCGCCGCGACAGCAGGATGTCGGCGGCGACCTTTTCGGTCGGCTTCTCCT 256 Query 30138 CCTTGTTCACGACCGGGAAATACTTGTCCTGCAGCAG 30174 | |||| |||| ||| ||||| || || | ||| Sbjct 257 CGATGTTGACGAGGTTGAAGTACTTCTCGTGGACCAG 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119010665573100