Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq14319 199 8e-47 seq8309 125 1e-24 seq6368 125 1e-24 >seq14319 Length=508 Score = 199 bits (220), Expect = 8e-47 Identities = 332/476 (70%), Gaps = 8/476 (2%) Strand=Plus/Plus Query 25443 TTCCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAG 25502 ||||| |||||||| | || ||||||||| ||||||||||||||||||| ||||||||| Sbjct 34 TTCCTGGGCACGAACGCCCGGACGGCGCAGGGCTATCACGGCAATTTCTACTTCGACGAG 93 Query 25503 TATTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCAC 25562 | || ||| | |||| | | || || ||||| || ||| ||||| ||| Sbjct 94 TTCTTCTGGACCTTCCGGTTCAACGACCTGAATAAGGTCGCCTCGATGATGGCCGCCCAC 153 Query 25563 AAGAAATGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACC 25622 ||||| ||||| || || ||| | || |||| ||| | | ||||||||| || | Sbjct 154 AAGAAGTGGCGGAAAACCTATCTGTCGTCGCCCAGCAGCGTGATGCACGAGGCCTATGGC 213 Query 25623 TTCTGGAGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGAT 25682 ||||||| ||||| ||| ||| || | || | |||| ||| | |||| Sbjct 214 TTCTGGACCGGCGACAACTGGAACCGGCGGCGGCCGAAGGACGAGAAGCGGGTCTTCGAC 273 Query 25683 ATTTCGCACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAG----TTTCGCCA 25738 | ||| ||||||| ||| ||| || || || ||||| || || || Sbjct 274 GTCAGCCACGCGGCGCTGAAGAACGG--GGCGCT-CG-GGCCCGACAAGATCTTCCGGCA 329 Query 25739 GATCGTGACGGTCGAGGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCT 25798 | ||||| |||||||||| | || |||||||||||| | ||||| ||||||||||| Sbjct 330 TGTGCTGACGATCGAGGATGCGGAGGCGGGCGGTTGCGACCTCTTCGACATCGACGAGCT 389 Query 25799 GCGCCTTGAATACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGA 25858 ||||| || ||| | || | || | ||| || ||| ||||||| ||||| |||||||| Sbjct 390 GCGCCAGGAGTACGGGCCGGACGAGTTCGCCAACCTGCTGATGTGCCAGTTCATCGACGA 449 Query 25859 TACCGCGTCGATCTTTCCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGG 25914 | | |||| | || ||||| || |||||| | ||||||| |||| || |||| Sbjct 450 TGCGCAGTCGGTGTTCCCGCTGGCGATGCTGCAGCCCTGCATGATCGATTCCTGGG 505 >seq8309 Length=800 Score = 125 bits (138), Expect = 1e-24 Identities = 281/415 (68%), Gaps = 14/415 (3%) Strand=Plus/Minus Query 12306 CCAAGCCGAGCCGCCGAGCAGATAGCCGTTTGCGATCAGCTCGCGGAATTTCGCGTTGAT 12365 ||| ||| |||||| || | ||||| | | |||||| |||||| || |||||||| Sbjct 778 CCAGGCCTCGCCGCCCAGGATGTAGCCCTGGACCTTCAGCTGGCGGAACTTGGCGTTGAT 719 Query 12366 GCTTTCGATCATGTCTTTCACGATCGACGGGTG-CATCGGCTTGTCGACAT---AAACCA 12421 | | ||||| ||||| | | | | ||| | || |||||||||||| | | || Sbjct 718 GGTCTCGATGATGTCGCGCGCCAG-GCTGGGCGTCAGCGGCTTGTCGACCGCCCACATCA 660 Query 12422 TGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCGTGTAGTTCTCGAATG 12481 || | || || || ||||| ||| | | |||||||| | | | | ||||| Sbjct 659 TGC---CCTCGGCGATGGTGTCCTTGAGGATGTCGGCGGTGCGGGCGGCGCTTTCGAACT 603 Query 12482 CGAACAGCGGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGATAGCCCGTCGAGTTGA 12541 ||| ||| || || |||||||| | ||||||||||| |||| || | || Sbjct 602 GGAAGGCCGGCTCGTCAGAGCAGGTCTGGTTGCCCCAGAAGCGGAAGCCGTTCTGGCGGA 543 Query 12542 TGAGCGTCGTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTCGCGGGGTCTTGCAAGT 12601 | |||| || || || |||| ||| |||||| ||||||| |||||| |||| | Sbjct 542 TCAGCGCGGTGACGCCGGCGGCGTTCAGGACGCCGGCGTCGGTCGAGGGGTCCTGCAGGG 483 Query 12602 CCCAGAAAACATCCTTGCTGATAC--CCGTA-ACGCCATTGATGCCGACATTCGAAATCG 12658 | || | ||||| | | ||| ||||| |||| |||| || || |||| Sbjct 482 CGAAGCTGAT---CTTGCGGGTCAGGCCGACGACGCCGTTGACCGCGACGTTGGAGATCG 426 Query 12659 TCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGCGCGCAAGCCGAGCGCGATCGC 12713 ||||||||||||| ||||||||||| ||||||||||| ||||| |||| ||| Sbjct 425 TCTTGTGCCAGCCGACTTCCTCGTCGAGCTTGGCGCGCAGGCCGACGGCGACCGC 371 >seq6368 Length=557 Score = 125 bits (138), Expect = 1e-24 Identities = 349/526 (66%), Gaps = 31/526 (6%) Strand=Plus/Plus Query 22516 CAGCAGCGCGGC--CGAGGTCTTCGACGACATACGCATCGTTCGACGATTCATAGTTCTC 22573 |||||| ||| | ||||||| |||| ||| || | |||||||| || ||||||||||| Sbjct 3 CAGCAGGGCGCCTTCGAGGTCCTCGAGGACGTAGCCGTCGTTCGAGGACTCATAGTTCTC 62 Query 22574 GATACGGTCGCGCTTCGCGTTGTCGACGATCGTGCGACGCCGTGCGCTGTCTTGAAAGTA 22633 || ||||| ||||| |||||||||||||||||||| || || || ||| || |||| Sbjct 63 GACGCGGTCCCGCTTGGCGTTGTCGACGATCGTGCGGCGACGCTTGCCGTCCTGGTAGTA 122 Query 22634 CAGAGACAGATTGTCGAAACTCGTCACCATCACGGCATTGGCCGGGAAGAAAGGCACGGT 22693 | || || ||||| | | || | || | | || ||||||| | || || Sbjct 123 GATCGAGAGGTTGTCCAGGCGGGTGATCAGGATCGAGCCGGTCGGGAAGTAGGGGAC--- 179 Query 22694 CACGGCCGGCAGGTTGCCGATGCGCTTCTGGC------TCTGGATCACGTCAGCGGCCAT 22747 | ||| | | ||||| || | ||||| | | | | ||| ||||| | Sbjct 180 CTGGGCGACCTGCTTGCC---GCCCAGCTGGCGCCGCGACAGCAGGATGTCGGCGGCGAC 236 Query 22748 CATTTCGGTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTCGTGCAACAGGCC 22807 | ||||||||||| | | |||||||||| ||| ||||| ||||| | |||||| Sbjct 237 CTTTTCGGTCGGCTTCTCCTCGATGTTGACGAGGTTGAAGTACTTCTCGTGGACCAGGCC 296 Query 22808 GCGACCGCACATCACGACGAGAGCCGTGTCGTCTTGGTGCCA-CGGGTC--GATCATGCT 22864 || || || ||| || | ||||||| ||| ||| | || | || | || | Sbjct 297 CGGATCGACGATGCAGACCAGGCCGGTGTCGTTGCGGTACCAGCTGGGCAGGAAC-TGGT 355 Query 22865 CGCGACCAGATCGGCGACGAGCGCATCGAGGTTCGCGTAAT------CGCCGGCCGCGCC 22918 |||| || ||| || || ||||||||| ||| | || |||||| ||| Sbjct 356 --GGACCGCGTCCATGACCAGGGCGTCGAGGTTCTTGTAGTCGGCGCCGGCGGCCGAGCC 413 Query 22919 GACGACGATCTTGCCGGCCGTCTT-CGCGCCTTCGTCCATCACGCGTTGCGGGGCTTGGT 22977 |||| |||| || || |||| | |||||||| | ||| | ||| | | Sbjct 414 GACGCGAATCT---CGTCC-TCTTCCTCGCCTTCGCTGAAGACGTGGGTCGGCATGTTCT 469 Query 22978 CGCGCATGCGTTGCAACCAGCCCTTATTGACGTCCTGCAACAGCGG 23023 |||||| | |||| ||||||||| ||||||||||| | |||||| Sbjct 470 CGCGCAGGTACTGCAGCCAGCCCTTGTTGACGTCCTGGAGCAGCGG 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103272898382550