Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq14742 531 6e-146 seq14161 87.8 2e-12 seq759 82.4 9e-11 >seq14742 Length=52551 Score = 531 bits (588), Expect = 6e-146 Identities = 730/1018 (72%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 181420 ATGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 181479 ||||||||| | ||||||||| | | ||||| ||||| ||||| || ||||| Sbjct 37758 ATGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTC 37817 Query 181480 TGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTAC 181539 || || |||||||| || ||||||| ||||| |||| || ||| | ||||| || || Sbjct 37818 AGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAAC 37877 Query 181540 TTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTT 181599 |||||| || || |||||||| || || || || ||||| || | || ||| ||| || Sbjct 37878 TTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTT 37937 Query 181600 CCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-T 181658 | | ||||| ||||| ||||| ||||| || ||||| ||| ||| || || | ||| | Sbjct 37938 CTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTAT 37996 Query 181659 GGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTT 181718 |||| |||||||| || || || || || ||| ||| | || || || ||| | | Sbjct 37997 GGGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACAT 38056 Query 181719 TTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTG 181778 || | || | || ||| | |||| | | || || |||||| | | ||||||||| ||| Sbjct 38057 TTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 181779 CTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTAT 181838 ||||| | | | || || |||||||| |||||||| || | |||||| | || | Sbjct 38117 CTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTT 38176 Query 181839 TCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTT 181898 | || || || || | || || || | |||||||| | ||||| ||||| || |||| Sbjct 38177 TTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTT 38236 Query 181899 TCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 181958 | ||||| || || |||||||| ||| || | || |||| ||||| ||||| ||||| Sbjct 38237 TTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTT 38296 Query 181959 TCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAA 182018 | || || ||||| ||||||||||| || ||| | | || | || || | | ||| | Sbjct 38297 TAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTA 38356 Query 182019 TTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCA 182078 ||||||||| || || || || || | | | |||| |||||| || || || ||| Sbjct 38357 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTCC 38416 Query 182079 AAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCT 182138 ||||| | |||| |||| |||||||| || |||||||| ||||||||||| |||| Sbjct 38417 GTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCT 38476 Query 182139 GGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCT 182198 ||||||| || || || |||| || ||||| | ||| | || ||||| ||||| Sbjct 38477 GGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTC 38536 Query 182199 TTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACC 182258 ||||||||||| | |||||||||| | || ||| | |||| | ||| | || Sbjct 38537 TTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATT 38596 Query 182259 TTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGA 182318 | |||||||||||||| || || |||||||| | ||| | || || || || ||||| | Sbjct 38597 TACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAA 38656 Query 182319 CGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCG 182378 | ||||||||||| || ||| | || ||||||||| | ||||| ||| | || | | Sbjct 38657 CTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAG 38716 Query 182379 ATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | ||||||||||| |||| |||||||| ||||||||||| | ||||| || || Sbjct 38717 ACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Score = 289 bits (320), Expect = 3e-73 Identities = 273/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 180252 GTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGT 180311 ||||||||||| ||||||||||| || |||||||| ||||||||| | || || || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 180312 GTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTT 180371 || || || |||||| | ||||| ||||||||||||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 180372 CGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAG 180431 |||||||| ||||||| || || ||| | || ||||| || |||||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 180432 ACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCG 180491 || |||||||| || ||||||||||| ||||| || ||| | |||||||| || || || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 180492 TTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGG 180551 ||||||||||| |||||| | ||||||||| | || || ||||| || ||||| || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 180552 TTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTC 180599 |||||||| | || | || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 255 bits (282), Expect = 7e-63 Identities = 265/345 (77%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | || ||||||||||||| ||| | ||||| || || | || |||| ||| Sbjct 12244 AACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACT 12185 Query 179835 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 179893 |||| |||||| |||| ||||||||||| || || || || |||||||| || ||||| Sbjct 12184 -TCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGA 12126 Query 179894 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 179953 || || |||||||| | | || || |||||||||||||||||||| ||||||||| | Sbjct 12125 GCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTAC 12066 Query 179954 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTG 180013 || ||||| |||||| | || ||||| || || |||||||| |||| | || ||||| Sbjct 12065 ATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTG 12006 Query 180014 GCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGC 180073 | | || ||||||||||||| |||| | |||| | ||||||| | | || || | Sbjct 12005 GTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTG 11946 Query 180074 CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCG 180118 ||||||||||||||| |||||| | ||||| || || |||||||| Sbjct 11945 CTACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 180598 TCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACG 180657 ||||||||||||| || | |||| |||||||||||| | ||||||||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 180658 TACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 180717 | ||||||| ||| | ||||||||||||||||||||||||||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 180718 CACTTGACCTGGCAGCTGCTGA 180739 || | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 Score = 113 bits (124), Expect = 6e-20 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 180114 ATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATT 180172 ||||| || ||||| ||| ||||| || ||||||||||| || || || |||| ||||| Sbjct 10477 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATT 10419 Query 180173 CCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGG 180232 | || |||||||| |||| |||||||| |||||||| | ||||| | || || ||||| Sbjct 10418 CATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGG 10359 Query 180233 CACCTTCAACTACATG 180248 || ||||||| |||| Sbjct 10358 AACTTTCAACTTCATG 10343 >seq14161 Length=2325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||| ||||||||| || ||||| ||||||||||||| |||||||||||| ||| Sbjct 1279 TTCCTCGGTAGCTCAGTGGTAGAGCAATCGACTGTTAATCGATCGGTCGTAGGTTCGAAT 1220 Query 141314 CCTACCTGGGGAGTCATGCTT 141334 |||||| |||||| ||| ||| Sbjct 1219 CCTACCCGGGGAGCCATTCTT 1199 >seq759 Length=9036 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 140960 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTAC 141019 ||||||||| ||||||||||| | ||||||||||| | ||||| ||||||||| ||| | Sbjct 1045 GTAGCTCAGCTGGATAGAGCAGCCGCCTTCTAAGCGGCAGGTCGCAGGTTCGAGCCCTGC 986 Query 141020 CTGGGTCGCC 141029 | |||||||| Sbjct 985 CGGGGTCGCC 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610273003899000