Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq14742 452 5e-122 >seq14742 Length=52551 Score = 452 bits (500), Expect = 5e-122 Identities = 733/1051 (70%), Gaps = 29/1051 (3%) Strand=Plus/Plus Query 170526 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCT 170585 |||||||||| || ||||||||| ||| ||||||||||| |||| ||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 170586 GGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACC 170645 |||||| | ||| | |||||||| || | || | || |||||||| || || || Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 170646 TTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTC 170705 || || ||||||||||| ||||||||| | ||||| |||||| | || || ||||||||| Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 170706 CTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGG 170765 |||||||||| ||||| || |||| || |||| ||| | | | ||| | ||| Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCTTTATTATTCTTATGG 37998 Query 170766 GGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTT 170825 |||||||||||||||||| ||| |||||||| ||| | || ||| |||||| ||| Sbjct 37999 GGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATTT 38058 Query 170826 GTAGCATTACATGGAGTCTTT-GGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGC 170884 | || ||||||||| ||||| || | || || || ||| | | |||||||| || || Sbjct 38059 ATTGCTTTACATGGA-TCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTGC 38117 Query 170885 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 170944 | || | | || ||||| || | || ||||| || ||| |||| || Sbjct 38118 TCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGT-TT 38176 Query 170945 CACTAGCATCTTTC-TGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | || |||| | || || ||| |||| || | ||||| || || || | Sbjct 38177 TTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTT 38236 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | ||||| ||||| ||||| |||| || ||||| | ||||| ||||| ||| || | Sbjct 38237 TTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTT 38296 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 | || ||||| |||||||||||||| ||||| | |||| | || |||||||||| | Sbjct 38297 TAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTA 38356 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 |||| ||||| || || | |||||||| | |||||| | | | || ||| Sbjct 38357 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGA------TGGTGACGGTGCTAA-- 38408 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 ||||||||||| ||| | || ||||| | |||||||||||| | Sbjct 38409 -------------CACATTCCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAA 38455 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | ||||| ||| | |||||||| || || ||||| |||||||||| || ||| | | Sbjct 38456 TGGTAACAGCGAACCGTTTCTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTT 38515 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 | |||||| | ||| | | |||||||| | ||| | |||| ||| |||| ||| Sbjct 38516 GGCTTCACTTCTTCATGCTTCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTG 38575 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || || |||| | || | | || || || || || || ||||| || | |||| Sbjct 38576 TAGTTGGGTTAGCTTTAAATTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAG 38635 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 | || || || || ||||| ||||||||||| || ||||| || | ||||||||||| Sbjct 38636 CTGAGGATCCGGAATTCGAAACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCC 38695 Query 171484 GAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTC--GTATTCCCAGAAGAAGT 171541 | || |||||| | | |||||||||||| |||| || |||||||| |||||||| Sbjct 38696 GTGCTTGGATGGCTGCGCAAGACCAACCACAT--GAACGTCTTGTATTCCCTGAAGAAGT 38753 Query 171542 GTTACCAAGAGGTAACGCACTTTAAACAATA 171572 ||||| | ||||| || || ||| ||||| Sbjct 38754 ATTACCTCGTGGTAATGCTCTATAATCAATA 38784 Score = 271 bits (300), Expect = 9e-68 Identities = 270/350 (77%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 169904 TCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAG 169963 ||||||||||||| ||||| |||||||| ||||| || ||||||||| ||| || || | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 169964 GAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAA 170023 | | || || || || |||||||| |||||||| |||||| | || ||||||||| ||| Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 170024 TCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG 170083 || | ||||| || || | || || ||| | || || || ||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 170084 AAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTT 170143 ||||||||||||| ||||| ||||| ||||||||||| ||| | |||||||| || |||| Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 170144 CATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTAT 170203 | ||||||||||| | ||||||||||| |||| | || || || || || | | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 170204 GGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTC 170253 |||| || || | ||||| | || |||||||||||||| || || ||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 223 bits (246), Expect = 4e-53 Identities = 251/331 (76%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 |||||||| |||||| | ||||| || ||| | ||||| | | ||| |||||| | Sbjct 12229 GGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACTTC-TGTATTCATCAT 12171 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || |||||||| || |||||||| || || | || ||||| | ||||| Sbjct 12170 CGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTC 12111 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 || || || || |||||||||||||||||||| |||||||| ||||||||||||| || Sbjct 12110 ATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGG 12051 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 |||| ||||||||||| |||||||| || || | ||||| ||||| || || ||||| Sbjct 12050 TTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGG 11991 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCT-CAGCATACATGGGAAGAC 169741 |||||| || || | | | ||||||| | | ||||| | | || |||||||| | Sbjct 11990 TCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTG 11932 Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCG 169772 | |||||| |||| ||| | ||||| ||||| Sbjct 11931 AATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 169768 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTC 169827 |||||||||||||| ||| || |||||||| ||||| | ||||| || |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 169828 TTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 169887 | | || || | || || ||||| ||||||||||||||||| |||||||||| || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 169888 ACTTTCAACTTTATG 169902 ||||||||||| ||| Sbjct 10357 ACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579095328404000