Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq14742 522 3e-143 >seq14742 Length=52551 Score = 522 bits (578), Expect = 3e-143 Identities = 726/1014 (72%), Gaps = 6/1014 (1%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||| | | ||||| |||||||| | |||||||| ||||| |||||| | Sbjct 37774 GATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTC 37833 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||| ||| |||| ||||||| ||| | ||||||||| | ||||| || || ||| Sbjct 37834 CCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGG 37893 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTC 169498 ||||| || || | ||||| || |||||||| ||||||| | || || ||||| Sbjct 37894 TACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTT 37953 Query 169499 AGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAA 169558 || ||||| || ||||| ||||| | | || ||||||| || ||||||||| Sbjct 37954 TCAACTCCTGCAAACAGTATGGCTCACTCTTTATTATTCTTATGGGGACCTGAAGCACAA 38013 Query 169559 GGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGT 169618 || || || ||| ||||||||||| |||||||| |||| ||| | || | ||||| Sbjct 38014 GGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATTTATTGCTTTACATGGA 38073 Query 169619 GCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATC 169678 | || | || ||||| || ||| | | || |||||| | || ||| || | Sbjct 38074 TCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTGCTCGTTCAGTTAATTTA 38133 Query 169679 CGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTG--TCAGTGTCTTTC 169736 ||||| || ||||||||||| ||||| | |||||| | || |||| ||||| |||| Sbjct 38134 CGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTTTTGTTTCAGT---TTTC 38190 Query 169737 TT-ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 || || |||||| | ||||| || ||||| |||||||| ||||| ||| |||| Sbjct 38191 TTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTTTTGGTGTAGCAGCT 38250 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 169855 || ||| | ||| | || || | ||||| ||||| |||||||| || || ||||||||| Sbjct 38251 ATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTTTAAACCCATTCCAC 38310 Query 169856 ATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACA 169915 ||||||||||||||||| | || || | || | | | |||||| || |||| ||| Sbjct 38311 ATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTATTCACGGTGCTACT 38370 Query 169916 GTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCG 169975 || || |||||||| | |||||| ||||| || || || ||| || ||| | | Sbjct 38371 GTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTCCGTGCATTTAACCCA 38430 Query 169976 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 170035 ||||| | ||||| ||||| || ||||| || || ||||| |||||||| || || || Sbjct 38431 ACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCTGGTCTCAAATTTTT 38490 Query 170036 GGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 170095 || |||| || || || || ||||||||||| || |||||| | |||| |||||| | Sbjct 38491 GGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTCTTGTTCCTGTTGTA 38550 Query 170096 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 170155 |||||||||| || ||||||| | |||| | ||| | ||| | |||||||| || Sbjct 38551 GGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATTTACGTGCTTATGAC 38610 Query 170156 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 170215 ||||| || || || | ||||| || ||||| ||||| || || |||||||| ||| Sbjct 38611 TTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAACTTTCTACACAAAA 38670 Query 170216 AACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAA 170275 || || | || |||||||| | ||||| ||| |||| | || |||||||||||| Sbjct 38671 AATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCACATGAA 38730 Query 170276 AACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACTGTGATCCATA 170329 | | ||||| |||||||| | || | ||||| || || | ||| ||| Sbjct 38731 CGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCTATAATCAATA 38784 Score = 289 bits (320), Expect = 3e-73 Identities = 273/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 168367 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 168426 || ||||||||||||||||| ||||| ||||| || ||||| ||| | || |||||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 168427 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTT 168486 ||||||||||| || || ||| |||||||| || || ||||| ||| | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 168487 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 | || || ||||||| |||||| ||| | || ||||| ||||| |||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 ||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 ||||||||||| || || || ||||||||| | ||||| ||||| || || || || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTC 168714 ||||| || | || | || || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 255 bits (282), Expect = 7e-63 Identities = 271/352 (77%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 167884 ACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 167943 ||| | ||||| | || ||||||||||||| || | ||||| || || | || || Sbjct 12250 ACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACA 12191 Query 167944 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 168002 || ||| ||||| |||||| |||| ||| ||||||| || || || || ||||| || || Sbjct 12190 GCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTAT 12132 Query 168003 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 168062 ||||| || || |||||||| | | || || |||||||||||||||||||| ||||| Sbjct 12131 TCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGT 12072 Query 168063 CCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGA 168122 ||| | || || |||||||| | || ||||| || || |||||||| |||| | || Sbjct 12071 TCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGA 12012 Query 168123 TGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTAT 168182 ||||||||| || ||||||||||||| |||| || | || | |||||| || | ||||| Sbjct 12011 TGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTAT 11952 Query 168183 CTA-TGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCG 168233 | ||| |||||||| |||||||||||| | || || |||||||||||||| Sbjct 11951 TTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 168229 ATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTC 168288 |||||||| ||||| ||| || |||||||| ||||| || || || | |||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 168289 CTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGA 168348 | | |||||| |||| |||||| ||||||||||| ||||| | || ||||| ||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 168349 ACATTCAACTACATG 168363 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 168713 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 168772 ||||||||||||| || | |||| ||| |||||||| || ||||| |||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 168773 TTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 168832 | | ||||| ||| | ||||||||||||||||| |||||||| || |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 168833 CA 168834 || Sbjct 8165 CA 8164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574357089573000