Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq14742 269 3e-67 >seq14742 Length=52551 Score = 269 bits (298), Expect = 3e-67 Identities = 269/349 (77%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 168993 TCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAG 169052 |||| |||||||| |||||||||||||||||||| || ||||| ||| ||| || || | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 169053 GTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAA 169112 || | || ||||| || ||||||| |||||||| |||||| | ||||| || ||| ||| Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 169113 TCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG 169172 || | || |||||||| | |||||| ||| | || ||||| |||||||||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 169173 AAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAA 169232 |||| || || ||||| || |||||||| ||||| || | ||||||||||| || || Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 169233 GTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTAT 169292 |||||||||||| | | ||||||||| |||| | | ||||| || || | | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 169293 GGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATT 169341 |||| || || | ||||| | || |||||||||||||| |||||||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATT 8935 Score = 232 bits (256), Expect = 8e-56 Identities = 277/371 (75%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 || || |||||| | || || ||| | ||| | | || | |||||||||||||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||||||||| | | ||| ||||| | || || || |||||||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTC-TGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || |||||||| || || | || || || | ||| | || | || |||||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||||||| ||||| |||||||| | |||||||| || ||| |||| ||||||||||| Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| | | | |||||||||||||| || |||||||||||||| || | | Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 168790 CTTCCACTTCCTAATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGAATTATCATACA 168848 | ||||||| | | || || | |||| ||||||||| | | ||||||||||| ||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACC 11914 Query 168849 GACTAGGTATG 168859 | |||||||| Sbjct 11913 GTTTAGGTATG 11903 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 168857 ATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTC 168916 ||| | |||||||| ||| ||||| || || ||||| | || || |||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 168917 CTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGA 168976 | | || || | || || |||||||||||||||||||||||| |||| || |||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 168977 ACATTCAACTTCATG 168991 || |||||||||||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 169343 AACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTA 169402 ||||| ||||||||||| || || | | ||| | | || |||| ||| | Sbjct 8283 AACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACATC 8224 Query 169403 CTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCA 169462 | ||| | || ||| | ||||||||||| ||||| |||||||| || |||||||||||| Sbjct 8223 ATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCCCA 8164 Query 169463 CTAGACTTAGCATCTGCTGA 169482 |||||||||| |||| ||| Sbjct 8163 TTAGACTTAGCGTCTGTTGA 8144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564327124188000