Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq14742 421 8e-113 >seq14742 Length=52551 Score = 421 bits (466), Expect = 8e-113 Identities = 729/1051 (69%), Gaps = 29/1051 (3%) Strand=Plus/Plus Query 172948 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 173007 |||||||||| || ||||||||| ||| ||||| ||||| | || ||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 173008 GGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACC 173067 |||||| | ||| | ||||||||||| || | | || |||||||| || || || Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 173068 TTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTT 173127 || || ||||||||||| ||||||||| | || ||||||||| | ||||| ||||| Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 173128 TTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGG 173187 ||||||||||| || || || |||| || |||| ||| | | | ||| | ||| Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCTTTATTATTCTTATGG 37998 Query 173188 GGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTT 173247 |||||||||||||||||| || ||||||| ||| | || || ||||||| ||| Sbjct 37999 GGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATTT 38058 Query 173248 GTAGCATTACATGGAGTCTTT-GGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGC 173306 | || ||||||||| ||||| || | || || || ||| | ||||| ||||| || || Sbjct 38059 ATTGCTTTACATGGA-TCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTGC 38117 Query 173307 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 173366 | || | | || ||||| || | || ||||| || ||| |||| || Sbjct 38118 TCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTTT 38177 Query 173367 CACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATT 173426 | | || ||||| |||||| |||| || | ||||| || || ||| || Sbjct 38178 TGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTTT 38237 Query 173427 CGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATT 173486 ||||| ||||| || || |||| || ||||| | ||||| ||||| ||| || || Sbjct 38238 TGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTTT 38297 Query 173487 GAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCAT 173546 || ||||| |||||||||||||| ||||| | |||| | || || ||||||| || Sbjct 38298 AAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTAT 38357 Query 173547 TCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAA 173606 ||| ||||| || || | |||||||| | ||||| || ||| ||| Sbjct 38358 TCACGGTGCTACTGTTGAAAACACATTATTTGAAG------------ATGGTGACGGT-- 38403 Query 173607 GATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTAT 173666 | | || |||| ||| | |||||| | || ||||| | ||||||||||| || Sbjct 38404 GCT--AA--CACA---TTCCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAAT 38456 Query 173667 GATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATT 173726 | | ||||||||| | |||||||| || || ||||| | || || ||||| ||| | | Sbjct 38457 GGTAACAGCGAACCGTTTCTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTG 38516 Query 173727 TTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTAT 173786 | |||||| ||||| | | || ||||| | ||| | |||| ||| | || ||| | Sbjct 38517 GCTTCACTTCTTCATGCTTCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGT 38576 Query 173787 CGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 || || | || |||| ||| | || || ||||| || || ||||| || | |||| Sbjct 38577 AGTTGGGTTAGC-TTTAAATTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAG 38635 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 | || ||||| || ||||| ||||||||||| || ||||| || | ||||||||||| Sbjct 38636 CTGAGGATCCGGAATTCGAAACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCC 38695 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTC--GTATTTCCAGAAGAAGT 173963 | || |||||| | | ||| ||||||||| |||| || ||||| || |||||||| Sbjct 38696 GTGCTTGGATGGCTGCGCAAGACCAACCACAT--GAACGTCTTGTATTCCCTGAAGAAGT 38753 Query 173964 GTTACCAAGAGGTAACGCACTTTAAATAATA 173994 ||||| | ||||| || || ||| |||| Sbjct 38754 ATTACCTCGTGGTAATGCTCTATAATCAATA 38784 Score = 284 bits (314), Expect = 1e-71 Identities = 273/350 (78%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 172322 TCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAG 172381 |||| |||||||| ||||| |||||||| ||||| || ||||||||| ||| || || | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 172382 GAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAA 172441 | | ||||| || || |||||||| |||||||||||||| ||||| || || ||| ||| Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 172442 TCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAG 172501 || | || || |||||| ||||| ||| | |||||||| ||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 172502 AAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTT 172561 ||||||||||||| ||||| ||||| ||||||||||| ||| | |||||||| || |||| Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 172562 CTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTAT 172621 ||||||||||||| | | ||||||||| |||| | || || || || || | | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 172622 GGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTC 172671 |||| || || | ||||| | || |||||||||||| | ||||| ||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 228 bits (252), Expect = 1e-54 Identities = 249/328 (76%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||||||||| |||||||||| || | ||||| | | |||||| | Sbjct 12229 GGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATC 12170 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| || |||||||| || |||||||| || || | || |||||| | ||||| Sbjct 12169 GCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCA 12110 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 || ||||| || |||||||||||||||||||| |||||||| |||||||||| || ||| Sbjct 12109 TTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGT 12050 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || |||||||| || |||||||| || | ||||||| ||||| ||||| |||||| Sbjct 12049 TTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGT 11990 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCT-CAGCATACATGGGAAGACA 172160 ||||| || || | | | ||||||| | | ||||| | | || |||||||| | | Sbjct 11989 CCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGA 11931 Query 172161 GTGGGAACTATCATACAGATTAGGTATG 172188 |||||| |||| ||| | ||||||||| Sbjct 11930 ATGGGAATTATCTTACCGTTTAGGTATG 11903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 172670 TCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACG 172729 ||||||||||||||||||| || || || | ||| | | || |||| ||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 172730 TTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCC 172789 | | ||| | || ||| ||||||||||||||||||| || | ||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 172790 CATTAGACCTTGCTTCTG 172807 |||||||| | || |||| Sbjct 8165 CATTAGACTTAGCGTCTG 8148 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 172186 ATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTC 172245 ||| | || ||||| |||||| || || || || || |||| || ||| || ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 172246 CTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 172305 | | ||||| |||| || ||||| ||||||||||||||||| |||||||||| || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 172306 ACGTTCAACTTTATG 172320 || |||||||| ||| Sbjct 10357 ACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587931935866000