Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq14742 522 3e-143 >seq14742 Length=52551 Score = 522 bits (578), Expect = 3e-143 Identities = 735/1024 (72%), Gaps = 6/1024 (1%) Strand=Plus/Plus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAG-CGCGATCGTTTCGTATTTATTGGTTGGTC 163676 |||||||||| | ||||||||| ||| | | || ||||| |||||| | |||||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGG-TTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTC 37817 Query 163677 TGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAAC 163736 || | || ||| | || ||||||| | ||| |||| || ||| ||||||||||||| Sbjct 37818 AGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAAC 37877 Query 163737 TTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTT 163796 ||| || || || |||||||| ||||| | || |||| ||| | || ||| ||| || Sbjct 37878 TTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTT 37937 Query 163797 TCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-T 163855 | ||||| ||||| ||||| ||||| || ||||| ||| ||| || || |||| | Sbjct 37938 CTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTAT 37996 Query 163856 GGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATT 163915 |||| ||||| || || || || || || ||| ||| | || || || |||| | Sbjct 37997 GGGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACAT 38056 Query 163916 TTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTG 163975 || | || | || ||| | || | | | ||||| || ||| | || ||||||||| ||| Sbjct 38057 TTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 163976 CTCGCCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTC 164034 |||| | | | | | | | || |||||||| ||||||||||| | |||||| | || Sbjct 38117 CTCGT-TCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTT 38175 Query 164035 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCT 164094 || ||| || || | || ||||| | || ||||| | ||||| || ||||| | Sbjct 38176 TTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGT 38235 Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||| || ||||| || ||| | ||| | ||||| | ||||| || |||||||||||| Sbjct 38236 TTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACT 38295 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 || ||||| ||||| |||||||| || || ||| | |||| | || | ||| |||| Sbjct 38296 TTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCT 38355 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 |||||||| | || |||||||| ||||| | ||||||||| || || ||||| || Sbjct 38356 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTC 38415 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 || ||| | | ||||| | ||||| ||||| || ||||| || || ||||| ||| Sbjct 38416 CGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTC 38475 Query 164335 TGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 164394 ||||| || || || || ||||| || || || || || |||||||| || |||||| | Sbjct 38476 TGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTT 38535 Query 164395 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 164454 |||| |||||| | ||||| |||| || ||||||| | |||| | ||| | ||| Sbjct 38536 CTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAAT 38595 Query 164455 CTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 164514 | |||||||| || || || ||||| ||| | ||||| || ||||| || ||||| Sbjct 38596 TTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAA 38655 Query 164515 ACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTT 164574 |||||||| || || || || | || || ||||| ||||||| ||| | || | Sbjct 38656 ACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAA 38715 Query 164575 GACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTT 164634 ||||| ||| ||||| |||| ||||| ||||||||| | || | |||||||| || Sbjct 38716 GACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCTA 38775 Query 164635 TAAT 164638 |||| Sbjct 38776 TAAT 38779 Score = 316 bits (350), Expect = 2e-81 Identities = 279/348 (80%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 162889 GTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 162948 || |||||||| |||||||||||||| ||||| || ||||||||||| ||||| || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 162949 GTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 163008 || || ||||||||| | ||| ||||||||||||||| || || || || || | || Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 163009 CGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 163068 ||||| || ||||||| || || ||| | || ||||| ||||||||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 163069 ACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 163128 ||||||||||| || || || ||||||||||| || ||||| ||||||||||| || || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 163129 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 163188 ||||||||||| ||||| || ||||||||| | ||||| ||||| || || || || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 163189 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTC 163236 ||||| || | || | ||||| |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 246 bits (272), Expect = 3e-60 Identities = 280/373 (75%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||| || || ||| | ||| ||| | ||||| | || ||||||||||||| || | Sbjct 12272 TTTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTAT 12213 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 ||||| || || | || |||| || ||||| |||||| |||| ||| ||||||| | Sbjct 12212 CATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCAC 12154 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || ||||| || || ||||| || || |||||||| | | || || |||| Sbjct 12153 CTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACA 12094 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 |||||||||||||||| |||||||| | || ||||| |||||| | || ||||| || | Sbjct 12093 ACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAA 12034 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| |||| | ||||||||| | || ||||||||||||| |||| | | | Sbjct 12033 TTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 11974 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | ||||||| | | || || | ||||||||| |||||||||||| | ||||||| Sbjct 11973 TTTGCCACTTCTTCTTAGGTATTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTACC 11914 Query 162743 GTCTTGGTATGCG 162755 || | |||||||| Sbjct 11913 GTTTAGGTATGCG 11901 Score = 122 bits (134), Expect = 1e-22 Identities = 110/136 (81%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 162751 ATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTT 162809 |||||||| ||||| ||| ||||| |||||||| || |||||||| || | ||||| || Sbjct 10477 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATT 10419 Query 162810 CCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGG 162869 | | |||||||| |||| ||||||||||||||||| | ||||| || |||||| ||| Sbjct 10418 CATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGG 10359 Query 162870 TACATTCAACTACATG 162885 || ||||||| |||| Sbjct 10358 AACTTTCAACTTCATG 10343 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 163235 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACG 163294 ||||||||||||| || | |||| ||| |||||||| || ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 163295 TTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCC 163354 | | |||||||| || ||||||||||||||||||||||| ||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 163355 CACTTGAC 163362 || | ||| Sbjct 8165 CATTAGAC 8158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557470914995000