Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq14742 495 4e-135 seq6395 84.2 2e-11 >seq14742 Length=52551 Score = 495 bits (548), Expect = 4e-135 Identities = 726/1019 (71%), Gaps = 6/1019 (1%) Strand=Plus/Plus Query 168480 TGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCT 168539 ||||| |||| | ||||||||| | | || ||||| || ||||| |||||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 168540 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCT 168599 || ||||||||||| || ||||||| |||| |||| |||||| ||||||| || || Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 168600 TTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 168659 || || || ||||| || || || || || ||| ||| | || || ||||| Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 168660 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTC-TCTG 168718 | || || || ||| ||||| ||| | ||||| ||| ||| || | ||| | || Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTATG 37997 Query 168719 GGGTCCTGAGGCACAAGGGGA-TTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTT 168777 ||| ||||| |||||||| || ||| || | ||||||||| | || || || ||| | | Sbjct 37998 GGGACCTGAAGCACAAGGTGACTTTACTC-GTTGGTGTCAATTAGGTGGTCTATGGACAT 38056 Query 168778 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGG 168837 || | || | || || |||||| | |||| || || ||| | ||||| |||||| | | Sbjct 38057 TTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 168838 CACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTT 168896 | ||| ||| | | | ||||| |||||||||||||| ||||| | ||||| | ||| Sbjct 38117 CTCGT-TCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTT 38175 Query 168897 TTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCT 168956 |||||| || || | || ||||| | || ||||| | |||||||| ||||| | Sbjct 38176 TTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGT 38235 Query 168957 TTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACA 169016 || || || |||| || ||||| ||| || | || | ||||| |||||||||||||| Sbjct 38236 TTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACT 38295 Query 169017 CTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCC 169076 | || ||||| || |||||||||||||||||| |||| |||| || | | | ||| Sbjct 38296 TTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCT 38355 Query 169077 ATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTC 169136 ||||| |||| ||| || || || || | | | |||||||||| || || || ||| Sbjct 38356 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTC 38415 Query 169137 AAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTC 169196 |||||| || || || | || || || || |||||||| || || ||||||||| Sbjct 38416 CGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTC 38475 Query 169197 TGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTG 169256 |||||||| || ||||| |||| ||| ||||| | ||| | || ||||| ||||| Sbjct 38476 TGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTT 38535 Query 169257 TTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAAC 169316 ||||||||||| | |||||||||| | || ||| | |||| | ||| | || Sbjct 38536 CTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAAT 38595 Query 169317 CTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAG 169376 | |||||||||||||| ||||| ||||| || | ||||| || ||||| || || || Sbjct 38596 TTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAA 38655 Query 169377 ACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATT 169436 || |||||||| || || || | || || |||||| | ||||| ||| | || | Sbjct 38656 ACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAA 38715 Query 169437 GATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || ||||| ||||| |||| |||||||| |||||| | || || |||||||| || Sbjct 38716 GACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Score = 295 bits (326), Expect = 7e-75 Identities = 290/372 (78%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| || ||| |||| || ||| | |||||| | || ||||||||||||| ||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||||||||| || | |||| || ||||| ||||||||||| ||| ||| ||| || Sbjct 12211 ATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 ||| || || ||||||||||| || || |||||| |||||||| | | || || ||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||||||||||||||| ||||||||| | || || ||||||||| | || ||||| || || Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 |||||||| || | | || |||||||| ||||| |||||||||| |||| | | || Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 || ||||||| | | || || | ||| ||||||||||| |||||| | |||||||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 167447 TCTCGGTATGCG 167458 | | |||||||| Sbjct 11912 TTTAGGTATGCG 11901 Score = 246 bits (272), Expect = 3e-60 Identities = 235/301 (78%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 167592 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 167651 || |||||||| ||||||||||| || |||||||| ||||| ||| | || |||||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 167652 GTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTT 167711 ||||| || ||||| | ||| ||||||||||||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 167712 CGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAG 167771 |||||||| || |||| || || ||| | || ||||| |||||||| |||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 167772 ACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 167831 || || ||||| || ||||| ||||||||||| || || | |||||||||||||| || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 167832 TTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGG 167891 ||||||||||| || || | ||||||||||| || || ||||| || |||||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 167892 T 167892 | Sbjct 8981 T 8981 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 167454 ATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 167513 |||||||| ||||| ||| || |||||||||||||| || || || |||| |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 167514 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGT 167573 || |||||||| |||| ||||||||||||||||| | |||||| | ||||||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 167574 ACATTCAACTACATG 167588 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||||||| | ||||||||||| | ||||||||||||||||||||||||||| Sbjct 8238 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAAT 8179 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 || ||||||||||| | ||| | || ||| ||| Sbjct 8178 GCGCACAACTTCCCATTAGACTTAGCGTCTGTTGA 8144 >seq6395 Length=39126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 22554 TCCTCTTTAGCTCAGCGGT-AGAGCGGTTGACTGTTAATCAATTGGTCCCTGGTTCGATC 22612 |||||| |||||||||||| |||||| |||||||||||||||| |||| | ||||||||| Sbjct 8329 TCCTCTCTAGCTCAGCGGTTAGAGCGCTTGACTGTTAATCAATAGGTCGCAGGTTCGATC 8270 Query 22613 CCAGGAAGGGGAG 22625 || | || |||| Sbjct 8269 CCTGCGAGAGGAG 8257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560494301690000