Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq14742 325 6e-84 >seq14742 Length=52551 Score = 325 bits (360), Expect = 6e-84 Identities = 281/348 (81%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 215798 GTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 215858 GTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATC 215917 || || ||||||||||| ||||||||||||||||||||| | || || || ||| ||||| Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 215918 AGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAA 215977 | || || ||||| | |||||| ||| | || ||||| ||||| ||||| || ||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 215978 ACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCT 216037 ||||||||||| ||||||||||| ||||||||||| || | |||||||||||||| ||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 216038 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGG 216097 ||||||||||| | | ||||||||| | || || | || || || |||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 216098 GCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTC 216145 ||||| | ||| | ||||||||||| |||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 259 bits (286), Expect = 7e-64 Identities = 281/370 (76%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||||| ||| ||||| |||||| || ||| | ||| | |||||||| ||||| || Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | ||||||| || |||||| | || ||||||||||||||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCT 12152 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || |||||||| || || | ||||||||| ||||||| ||| | || || |||||| Sbjct 12151 CCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 12092 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 |||||||||||||||||||| |||| |||||||| || || ||||| |||||||| || Sbjct 12091 ATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATT 12032 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | | || || ||| | ||||| ||||| |||| |||| | | | Sbjct 12031 TGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 11972 Query 215594 TTCCACTTCCTCATTGGTATTT-CTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652 | ||||||| || | ||||||| |||| ||| || | | |||||| | |||||| | Sbjct 11971 TGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 215653 ATTAGGTATG 215662 ||||||||| Sbjct 11912 TTTAGGTATG 11903 Score = 109 bits (120), Expect = 8e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 215660 ATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTC 215719 ||| | |||||||| ||| |||||||| || || || | ||||| |||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 215720 CTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGA 215779 | | ||||| |||| || |||||||||||||||| |||||| | || ||||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 215780 ACATTCAACTACATG 215794 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 216144 TCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACG 216203 ||||||||||||| || || || ||| | ||| || | |||||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 216204 TTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | | ||| | || |||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 8225 TCATCAACCGTGCTA-ACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTC 8167 Query 216263 CCATTAGACTTGGCTGCTGCTGAA 216286 ||||||||||| || ||| |||| Sbjct 8166 CCATTAGACTTAGCGTCTGTTGAA 8143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744930488138000