Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq14742 279 6e-70 >seq14742 Length=52551 Score = 279 bits (308), Expect = 6e-70 Identities = 271/349 (78%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 170192 TCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTG 170251 |||| |||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 170252 GTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAA 170311 || | || || || || | ||||| ||||||||||||||| | ||||| || ||| ||| Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 170312 TCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAG 170371 || | || || || || ||||| || ||| | |||||||||||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 170372 AAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTA 170431 |||||||||||||||| || |||||||| |||||||| | | ||||||||||| ||| Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 170432 GCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCT 170491 || ||||| |||| | ||||||||| | ||| | | || ||||| | || | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 170492 GGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATT 170540 |||| ||| | | ||||||| || |||||||| ||| | || ||||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATT 8935 Score = 246 bits (272), Expect = 4e-60 Identities = 280/370 (76%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 169695 TGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGAT 169754 ||| ||| | || || || | ||||| | || | |||||||||||||| | ||||| Sbjct 12266 TGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGAT 12207 Query 169755 CCCATGTCTATTAGCAGCAGCAAC--CTGCTTT-ATCGTTGCTTTCATCGCAGCTCCACC 169811 ||| | |||| | |||| || ||| || ||| | ||||||||||| || || || Sbjct 12206 CCC---TACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCTCC 12150 Query 169812 TGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACAT 169871 || || |||||||| || | || || || | |||||||| | || || |||||||| Sbjct 12149 AGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACAT 12090 Query 169872 CATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTG 169931 |||||||||||| |||||||| | |||||||| || ||| | || ||||| || ||||| Sbjct 12089 CATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATTTG 12030 Query 169932 GGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTT 169991 |||||| || || ||||||||||||| || |||||||||||||| |||||| | | | Sbjct 12029 GGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTG 11970 Query 169992 CCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTT 170050 ||||||| | | || || | |||| ||||||||| | | |||||| |||| ||||||| Sbjct 11969 CCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACCGTT 11911 Query 170051 TAGGTATGCG 170060 |||||||||| Sbjct 11910 TAGGTATGCG 11901 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 |||||||||||||| |||||| || ||||||||||| |||| || || |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 | | |||||| |||| || || |||||||| || || |||||| |||||||||| || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 170176 ACATTTAACTTCATG 170190 || || ||||||||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 170542 AACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACATGGGCAGAC 170598 ||||||||||| ||| |||| || ||| ||| ||| | || ||||||||| Sbjct 8283 AACTTCAACCAATCA---GTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGAC 8227 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | | ||| | || ||| ||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 8226 ATCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTC 8167 Query 170659 CCACTTGACTTGGCAACTGCTGA 170681 ||| | ||||| || ||| ||| Sbjct 8166 CCATTAGACTTAGCGTCTGTTGA 8144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582729791140000