Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq334 100 2e-16 seq14182 89.7 3e-13 seq7244 82.4 5e-11 >seq334 Length=28022 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| |||| |||| || ||||| ||||| ||||| | ||| | || |||| Sbjct 27855 CAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATC 27796 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 27795 CTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 27736 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| ||||| || || || | || | | ||| || || | || ||| Sbjct 27735 CTGAATCTTGCTCTTGAC--ATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATG 27678 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || || ||||| |||||||| |||||| Sbjct 27677 GTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATA 27642 >seq14182 Length=2243 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| || | |||| || ||||| ||||| ||||| | || | || |||| Sbjct 579 CAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATC 638 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 639 TTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTC 698 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| ||||| || || || | || | | ||| || || | || ||| Sbjct 699 CTGAATCTTGCTCTTGAC--ATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATG 756 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || ||||| |||||||| ||||| Sbjct 757 GTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 >seq7244 Length=2690 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | |||| | || |||| |||||||| || ||||||||| Sbjct 634 TCCTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAT 693 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || | |||||||| || | || | ||||||||||| Sbjct 694 ATCAAGCGTTGCTGATCCGGTGGGATGCCCTCCTTGTC 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324569406241800