Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq14742 293 3e-74 >seq14742 Length=52551 Score = 293 bits (324), Expect = 3e-74 Identities = 273/347 (79%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || | || |||||||| || || ||| | ||||| |||||||| ||||| Sbjct 8935 AATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 8994 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| || ||| Sbjct 8995 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 9054 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||| || ||||| || || ||||| ||||| || || ||||| ||||||||| Sbjct 9055 AAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTGA 9114 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||| || | ||| || | ||||| |||||||| ||||||| ||| ||| Sbjct 9115 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGAA 9174 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | |||||| |||||||||||||||| | ||||| |||||||||||||| || Sbjct 9175 GTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 9234 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGAC 84451 |||||||| || || |||||||| ||||| || || || ||||| || Sbjct 9235 AACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 242 bits (268), Expect = 4e-59 Identities = 281/374 (75%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA--AGCAAATGCACCAA 84642 |||||||| | ||| || || | ||||||||||||||||||||| ||||||| ||| | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTAGCAGCAAAT--ACCTA 11958 Query 84643 TCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATAC 84702 | |||||| | || | | ||| ||||| ||||| || |||| ||| || || | | Sbjct 11959 AGAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAG 12018 Query 84703 TTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGG 84762 || ||||||||||| || |||||||||| ||||||||| || || | ||||| || | Sbjct 12019 ATGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAG 12078 Query 84763 CACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGT 84822 ||||||| ||||||||||||||||| | | ||||||| ||||||||||| ||||| | Sbjct 12079 CACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCAT 12138 Query 84823 CAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGT 84881 | ||||||||||| |||||| | | ||| || |||||||| ||||| ||| || | | | Sbjct 12139 CGATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGA-AGTAGCTGTTAAT 12197 Query 84882 AGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTG 84941 | || || ||||| | | || |||||||| | || | |||||| | ||| || Sbjct 12198 AATGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTA 12257 Query 84942 ACCCAATCACAGAA 84955 | ||| ||||| || Sbjct 12258 ATCCATTCACAAAA 12271 Score = 145 bits (160), Expect = 9e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 84455 CATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCC 84514 |||| ||||||| ||||| |||||||| | ||||| |||||||||||||||||||| || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 84515 GAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACA 84574 || |||||| | | |||||| |||| || ||||||||||||||||||||||| ||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 84575 GATCCATGGACGCAT 84589 ||||| |||||||| Sbjct 10463 AATCCAAGGACGCAT 10477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571157738573000