Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq14742 197 4e-46 >seq14742 Length=52551 Score = 197 bits (218), Expect = 4e-46 Identities = 253/349 (72%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 5327 AAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACG 5386 || ||||| | || || |||||||| || || || | || || | ||| || | ||| Sbjct 8935 AATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 8994 Query 5387 ACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGG 5446 || ||||||| ||| | |||||| ||||| ||| ||||| || ||| || ||| Sbjct 8995 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 9054 Query 5447 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGG 5506 ||||| | | |||||||| ||||| || || |||||||| || |||||||| ||||| Sbjct 9055 AAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTGA 9114 Query 5507 CCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAA 5566 |||||||| ||||| | ||| ||| |||| |||||||| || | || ||| Sbjct 9115 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGAA 9174 Query 5567 GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 || || | || ||||| |||| ||| || | ||||| ||||| ||||||||||| Sbjct 9175 GTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 9234 Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGA 5675 | ||||||||| || |||||||| || ||||| || || ||||| |||| Sbjct 9235 AACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAACGA 9283 Score = 196 bits (216), Expect = 1e-45 Identities = 268/372 (72%), Gaps = 2/372 (1%) Strand=Plus/Plus Query 5807 CGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGA-TACCAAT 5865 ||||| ||||| | |||| | |||||||| || |||| ||| || || | |||| | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAA 11959 Query 5866 AAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATT 5925 | ||||||| | |||| | |||||| || || || ||||| | ||| ||||| | | Sbjct 11960 GAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 12019 Query 5926 GGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGC 5985 | |||||||| || || ||||| ||||| ||||| ||||| || | || ||||| || Sbjct 12020 TGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGC 12079 Query 5986 TCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTC 6045 || || |||||||||||||| || | || || || | || || ||||| || || || Sbjct 12080 ACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATC 12139 Query 6046 GATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAG 6105 ||| || ||||| |||||||| | ||| || | || ||| ||| ||| || ||||| | Sbjct 12140 GATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGAAGTAGCTGTTAATAA 12199 Query 6106 TGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAAC 6165 || || ||||| | ||||| ||||| || | || | ||||| | || ||||||| Sbjct 12200 TGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAAT 12259 Query 6166 CCAGTCACAGAA 6177 ||| ||||| || Sbjct 12260 CCATTCACAAAA 12271 Score = 109 bits (120), Expect = 2e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| ||| |||| || | |||||||||||| ||||| || |||||||| ||||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 || | ||| |||||||| | || |||||||||||| | | | ||| ||||||| Sbjct 8204 CCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 8263 Query 5306 ACGACTGACTGATTGAAGTT 5325 || ||||| || |||||||| Sbjct 8264 ACTACTGATTGGTTGAAGTT 8283 Score = 95.1 bits (104), Expect = 4e-15 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||| ||||| ||||| ||||||||||| | ||||||||||||| |||| || ||||| Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 || ||| || | | ||||||| |||| || || ||||| || || || || ||||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTA-GCAGCTGCAACTGGAGCAGAGTAAGCTACAG 10461 Query 5796 AAATCCATGGTCGCAT 5811 |||||| || ||||| Sbjct 10462 CAATCCAAGGACGCAT 10477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152620188715350