Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq14742 210 7e-50 >seq14742 Length=52551 Score = 210 bits (232), Expect = 7e-50 Identities = 263/358 (73%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 26088 TTCCCATTGTCGTCCCAAGTAAGCTG-AGATGCCGATGAGAAAGTGGAACACAATAAGTT 26146 |||||||| || |||| ||| || | | || || | || |||||| | || || | || Sbjct 11924 TTCCCATTCACGACCCATGTA-GCAGCAAATACCTAAGAAGAAGTGGCAAACGATTAATT 11982 Query 26147 GATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGA 26206 | || || |||||||| || |||||||| || | | || ||||||||| |||||||||| Sbjct 11983 GGTAAGGACCACCGTTGTATAACCACTCATCTAAAGATGAAGCTTCCCAAATTGGGTAGA 12042 Query 26207 AGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCAT 26266 | || | ||| || ||||| |||| || || | || || ||||||||||||||||| | Sbjct 12043 AATGTAAACCAATAGCGTTTGATGTAGGAACAACAGCACCAGAGATGATGTTGTTTCCGT 12102 Query 26267 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 26326 | | ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| | Sbjct 12103 ATAATAATGAACCAGAAACTGGCTCACGAATACCATCGATATCAACTGGAGGTGCAGCGA 12162 Query 26327 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 26386 || || || | ||| | | |||||||| | || ||||||||| | || || | Sbjct 12163 TGAAAGCGATGATGAATACAGAAGTAGCTGTTAATAATGTAGGGATCATGATAACACCGA 12222 Query 26387 ACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 |||| || | || | ||||| | ||||| |||| ||| ||||| |||| | |||| Sbjct 12223 ACCAACCGATGTATAAACGGTTTTCAGTACTAGTAATCCATTCACAAAAACGTGCCCA 12280 Score = 194 bits (214), Expect = 5e-45 Identities = 251/347 (72%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 25585 AAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTG 25644 || ||||| | || || |||||||| || | || | ||| || | ||| || | | Sbjct 8935 AATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 8994 Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| | |||||| ||||| ||| || || || ||| || ||| Sbjct 8995 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 9054 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | | |||||||| ||||| || || |||||||| || || ||||||||||| Sbjct 9055 AAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTGA 9114 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824 |||||||| ||||| | ||| |||||| |||| |||||||| || | || ||| Sbjct 9115 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGAA 9174 Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884 || || | |||||||| |||| |||||| | ||||| ||||| || |||||||| Sbjct 9175 GTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 9234 Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931 | ||| ||||| || |||||||| || ||||| || || || || || Sbjct 9235 AACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 113 bits (124), Expect = 1e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| |||| |||||||| | ||||||||||| || |||||||| |||||||||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 ||||||| |||||||| | ||||| |||||||| | || | || | || ||| Sbjct 8204 CCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 8263 Query 25564 ACGACTGACTGATTGAAGTT 25583 || ||||| || |||||||| Sbjct 8264 ACTACTGATTGGTTGAAGTT 8283 Score = 104 bits (114), Expect = 7e-18 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25935 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 25994 ||| || |||||||| || || ||||| | ||||||||||||||||||| |||||||| Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 25995 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACA 26054 | ||| |||| | |||||| ||| || |||||||| || || || ||||||||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 26055 TATCCACGGCCTCAT 26069 ||||| || | ||| Sbjct 10463 AATCCAAGGACGCAT 10477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151964315108100