Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq5665 161 2e-34 seq5538 125 1e-23 seq9245 116 7e-21 seq3948 107 3e-18 seq2323 96.9 6e-15 seq1895 96.9 6e-15 >seq5665 Length=4992 Score = 161 bits (178), Expect = 2e-34 Identities = 293/419 (70%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGCTCCGCAACGACGTCG 110976 || ||||||||||||||||| | ||| ||| |||| | ||| || | ||| || || Sbjct 3077 CCCGTCGAGCCGAAGCCGCCGGCGCCGCGCGCGGTGTCGTCGAGGGTGGTTACGGCGACG 3018 Query 110977 AAACGGATGCG-GACATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGAT 111035 | ||| || | || || ||| | || ||| || ||||| |||||||| ||| Sbjct 3017 AGCCGGGCCCGCGTCACCGG-CGCCACCACCATCTGCGCGATGCGCTCGCCGCGCAGGAT 2959 Query 111036 GACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGCT 111095 ||||| | | |||| |||||| ||||||||||| | ||||||||| |||||| Sbjct 2958 CGTGAACGCCTCGTCGCCGAGGTTGACGAGGATCACCTTCACCTCGCCGCGGTAGTCGGC 2899 Query 111096 GTCGACGGTACCGGGCGAATTCAGGACAGTGATAGACGA-CTTGGCGGCGAGGCCCGAGC 111154 || ||||| |||||||| ||||| || |||| | || ||| || ||||| ||||||| Sbjct 2898 ATCTACGGTGCCGGGCGAGTTCAGCACCGTGAC-GCCGTGCTTCGCCGCGAGCCCCGAGC 2840 Query 111155 GCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCAGGGCGACCGTGACGCCGGTCGGGATGA 111214 ||||||| || ||| || |||| | |||||| |||| | | || ||||| | | Sbjct 2839 GCGGCCGCACCTGCGCCTCGTGGCCGGGCGGCAGCGCGATCCGCAGCCCCGTCGGCACCA 2780 Query 111215 -TGCCGACTTCGCCCGCAGCGATAGTAAAGGGTTCATCCTCGGGGATCGCGGCACGCAAG 111273 ||| | |||| | ||||| || | ||| | ||| | ||||| || | Sbjct 2779 GCGCCCGC-GCGCCGGGAGCGAGCGTCAGCGGTGCGTCC------AGGGCGGCGCGGAGA 2727 Query 111274 TCCAGGCCGGCGGACCCACGG--GTCTCGTAGGCTGGCAGCGGCAGGCCTTGGGCATGC 111330 |||| |||||||| | ||| ||||||||||| |||||||||||||| | ||| ||| Sbjct 2726 TCCATGCCGGCGG--CGTCGGCCGTCTCGTAGGCCGGCAGCGGCAGGCCCTCGGCGTGC 2670 >seq5538 Length=10074 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 191905 TCCCGATCCGGTCGACATCCATGTGGGCAAGCGCATCCGCATGCGTCGCAAGACTCTCGG 191964 |||| |||| | || || || || || | ||| || | |||| |||| || ||||| Sbjct 8334 TCCCAATCCCATAGATATACACGTCGGAAGCCGCGTCAGGCTGCGCCGCATGATGCTCGG 8393 Query 191965 CGTCAGCCAGGAACAACTCGCCAGCGCGCTGGGTCTGACCTTCCAGCAGGTGCAGAAGTA 192024 | | ||||||||| | |||| |||| ||| | || ||||||||| | |||||||| Sbjct 8394 CATGAGCCAGGAAAAGCTCGGGGATTCGCTCGGTATCACGTTCCAGCAGATCCAGAAGTA 8453 Query 192025 CGAGAAGGGCGGCAATCGCGTCAGCGCGAGCAAGCTGCACGGCATCGGCAAATTCCTGGG 192084 |||||||||| |||||||||| |||| ||| |||||| ||||| ||| | ||| Sbjct 8454 CGAGAAGGGCACCAATCGCGTCGGCGCCAGCCGGCTGCAGAACATCGCCAAGGTGCTGAA 8513 Query 192085 CGTTCCGGTCGCCTTTTTCTTCGA 192108 || |||||| |||| |||||||| Sbjct 8514 GGTCCCGGTCTCCTTCTTCTTCGA 8537 >seq9245 Length=1093 Score = 116 bits (128), Expect = 7e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 110995 GGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGATGACGAACGGATTGCGGCCG 111054 ||||||| || ||| || | |||||||||||| ||| |||| || | | | ||| Sbjct 1069 GGCGCGAGCCCGAGCTGTGCCACGCGGTCGCCGCGTGCCATGGCGAAGGGCTCGGGCCCG 1010 Query 111055 TGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGCTGTCGACGGTACCGGGCGAA 111114 || |||||||| | |||||| | |||||||||||||| |||| ||| || |||| Sbjct 1009 TGATTGATCAGCAGCACCTTCAATTCGCCGCGATAGTCCGAATCGATGGTGCCCGGCGTG 950 Query 111115 TTCAGGACAGTGATAGACG-ACTTGGCGGCGAGGCCCGAGCGCGGCCGGACTTGCAGTTC 111173 ||| | |||||||| | || |||| |||||||| || ||||| || || || | || Sbjct 949 TTCGGCACAGTGAT-GCCGTGCTTGAGCGCGAGGCCGGAACGCGGGCGCACCTGGATCTC 891 Query 111174 CAGGCCCGCCGGCAGGGCGACCGTGACGCCGGTCGGGA 111211 | |||| | || | ||||| || || |||||||| || Sbjct 890 GAAGCCCTCGGGGATGGCGAGCGCGAGGCCGGTCGCGA 853 >seq3948 Length=1342 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 71158 CGGCGAGTTCGAGATCGTGCCCTTCGAGTTCATGCGCGGGCGCACCTTCGACAACGCCTT 71217 ||||||| ||||||||| |||| ||| |||||||||||||| || | | || ||| Sbjct 338 CGGCGAGATCGAGATCGCGCCCATCGCCTTCATGCGCGGGCGGACGCTGGCGGACAGCTT 279 Query 71218 CGTGATCCTCGACGAGGCTCAGAACGCGTCGTTCGACGACCTGGAACTGTTCGTGACCCG 71277 | | |||||||||||||| |||||| | || ||| | || | ||||| ||||||| Sbjct 278 CATCATCCTCGACGAGGCGCAGAACACCACGCGCGAGCAGATGAAGATGTTCCTGACCCG 219 Query 71278 TACCGGTCAGGGTTCGCAAGTCGTGATCTGCGGCGATCCCGGCCAGATCGACATCCC 71334 ||| ||| | | |||||||||||||| ||| ||||| |||||||||| Sbjct 218 CTTCGGCCAGAACAGCCGGATGGTGATCTGCGGCGACCCCCGCCAGGTCGACATCCC 162 >seq2323 Length=1251 Score = 96.9 bits (106), Expect = 6e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 171699 GATCAGCATCATGCCGGCGAGCGCCAGGATTGCCCAGAAGGCTCCCATCTCCAGGTGCGG 171758 || |||||| || | ||||| | | ||| ||||||||||| || ||| || | | Sbjct 1175 GACCAGCATGATCGCCCCGAGCACGATGATCGCCCAGAAGGCGCCGTGCTCGAGATAGCG 1116 Query 171759 GAACTCGGTCAGCGTGCCGCGATCAACCGCCAGCAGCGTCAGTTCCCGAACGGCCAGGGC 171818 | | || | ||||| || | ||| ||| ||||| | || ||| || || Sbjct 1115 GTATTCCGCGAGCGTCCCCGCCTTTACCAGGTGCACCGTCATCGCGCGCACGAACATCGC 1056 Query 171819 GCCCACGCCGAGACCCACCATGATCCAGACGATGTTGCTCGTCAGTGCGAAGGCGCCGAT 171878 |||| | ||||| | |||| || |||||| ||| ||| |||||||||||||| Sbjct 1055 GCCCCCCGACAGACCGATGGCGATCACGATCATGTTGTTCGACAGCGCGAAGGCGCCGAT 996 Query 171879 GACGCCGTCAAACGAGAAGCTGGCGTCCAGGACTTCCAGGTAGATGAAGCCGCCGATGCC 171938 |||||||| || |||||| ||||| || ||||| || |||| ||| ||||||| ||| Sbjct 995 CACGCCGTCGAAGCTGAAGCTCGCGTCGAGCACTTCGAGATAGAGGAACCCGCCGAGGCC 936 Query 171939 GGCGCG 171944 | ||| Sbjct 935 CGAGCG 930 Score = 93.3 bits (102), Expect = 8e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 172312 ATGTGCGCCGCGAAGGCGACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCG 172371 || |||||||||| | |||||| ||| | |||| || ||||| |||||||| ||| Sbjct 544 ATCTGCGCCGCGATCGAGACGATGGCGATGGTAAAGACGATCCGCATTCCGAACACCGCG 485 Query 172372 ATGATGATGCCGACGCCCAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAACG 172431 || | ||| |||| | |||||| ||| || ||| | |||| | | || || Sbjct 484 ATCAGGATCCCGATGGTGAGGAAGCGCTGCTGCCAAACCGGGTCCATCTCGCGCAGCACA 425 Query 172432 TGGGCGTTGACGACGGCGTTGTCGAACGACAGCGAGATTTCCAGGATCG 172480 ||||||||| |||||||||||||| ||||||||| || ||||||| Sbjct 424 GTGGCGTTGACCACGGCGTTGTCGAAGCTCAGCGAGATCTCGAGGATCG 376 >seq1895 Length=5816 Score = 96.9 bits (106), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 ||||| |||||||||||||| |||||||||||| ||||||||||| |||| || ||| Sbjct 2336 TTTGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGT 2277 Query 133017 TCAAATCCCTCCCCCGCATCCACAAGCT 133044 |||||||| |||||||| ||| | ||| Sbjct 2276 TCAAATCCTGCCCCCGCAACCAAAGGCT 2249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895584727377000