Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq8540 187 3e-42 seq11271 100 4e-16 >seq8540 Length=3320 Score = 187 bits (206), Expect = 3e-42 Identities = 438/654 (67%), Gaps = 18/654 (3%) Strand=Plus/Plus Query 84881 GCCGGTCTTGGGCGAGCGCAGGGCGAACTCGGTGTCGTCGCGCACCGCGATCATGAACTC 84940 |||| ||| ||||| ||| | | |||| | ||||||||||||| |||||| | Sbjct 74 GCCGTCCTTCGGCGACGTCAGTTCCCATTCGGCGCCGTCGCGCACCGCTTCCATGAAGGC 133 Query 84941 GTCGGTGACGTTGACGGCGTTGTGCAGGTTGGTGATCTTGCGGTTCTGGTCGCCGCCGGT 85000 |||| || ||| ||| ||||||||| ||||||||| |||||| || Sbjct 134 ATCGGGGATCAGCACGCCGTGGTGCAGGTTCAGCGCCTTGCGGTTGAAATCGCCGGAGG- 192 Query 85001 AGGCTTGCGGGCCGTGATGAACTCGCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGC 85060 |||| | | | || |||||| ||| || ||||| |||||| |||||| ||| Sbjct 193 --GCTTCCTGATCTCGAGGAACTCCTCGATCTCGGGGTGCGAGATGTCGAGATAGCAGGC 250 Query 85061 GTTGGAGCCCCGGCGCGTGCCGCCTTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGC 85120 | ||||| || ||| ||| ||||||| || || |||||| || ||| Sbjct 251 GGCCGAGCCGCGCCGCAGCGAGCCCTGGCTGATCGCCAGCGTCAGGCTGTCCATCACGCG 310 Query 85121 CATGAACGGGATCACGCCGGTCGACTGCGAACCCTTCGAGGTCTTC----TCGCCCAGGC 85176 | ||| ||||| | ||| | | || || | |||| | | ||||| | | Sbjct 311 GACGAAGGGGATGATCCCGCTGGTCTTG----CCGTTGAGGCCGACCGGCTCGCCGATCC 366 Query 85177 CGCGCAGGGCGCCGTAGTAGGAGCCGATGCCGCCGCCCATCGACGAGAGCCAGATGACCT 85236 |||||| ||| | |||| |||||||||||||||| | || | |||||||| | || Sbjct 367 CGCGCACATTGCCCCAATAGGTGCCGATGCCGCCGCCCTTGGAGGCGAGCCAGACGTTCT 426 Query 85237 CGTCATAG-TGCTCGGAGATCGACTCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAG 85295 ||| || ||| || ||| ||| ||||||| | || | |||| |||| ||| Sbjct 427 CGTTCCAGGTGC-CGACGATGCCTTCGAGGCTGTCGGACACCGAGTTGAGATAGCACGAG 485 Query 85296 ATCGGCAGGCCGCGCGCGGACCCGCCGTTCGACAGCAGGGGCGTGGCGAACATGAACCAG 85355 ||||| || || || || ||||||||||| |||| || || ||| ||||||||| Sbjct 486 ATCGGAAGACCCCGGTTGGTGCCGCCGTTCGAAAGCACCGGGGTCGCGGGCATGAACCAC 545 Query 85356 AGGTTCGAGACATAGTCGTAGAGCCGCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCA 85415 |||||||||| |||||||||||||||||| ||||| | |||| || || |||| | Sbjct 546 AGGTTCGAGATGTAGTCGTAGAGCCGCTGGGCGTGCGCCTCGTCGTCGGCATAGGCATC- 604 Query 85416 CTCG-CGCGCGCGAAGGCCTCCTGGGGCGAGCTTTCCCCAGGCAGCAGATAGCGTTCACG 85474 | || ||||||||||| |||| | || | || || ||||| || ||||| || Sbjct 605 CGCGACGCGCGCGAAGAGATCCT---GATAGGTCTCGCCGGGCAGGAGGTAGCGGTCGGT 661 Query 85475 GAGGGTCTGAAGGGTGAAGTCGTCGAGCAGGGCGTCGCGGGTGAGATCGATCTT 85528 ||||| | | ||| ||| ||| ||||||||| | | |||| |||| Sbjct 662 CAGGGTTTCCTTGCCGAACTCGGTGAGATTGGCGTCGCGCGCGGCATCGGTCTT 715 >seq11271 Length=669 Score = 100 bits (110), Expect = 4e-16 Identities = 202/296 (68%), Gaps = 29/296 (10%) Strand=Plus/Minus Query 82084 AGCTTGATCATCGACTCCAC-GTGATGGCTCTCGTCGCGGATCGACCACTCGACGATCGT 82142 |||||||| || | || | | ||| ||||||||||||| | ||||||| ||||||| Sbjct 293 AGCTTGATGAT-GCCTTCGCAGTGCAGGCTCTCGTCGCGCACCGACCACGAGACGATCTG 235 Query 82143 GGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGGCGAAGGACGAGAA 82202 | |||||||||||| |||| |||| ||||| |||||||| |||||| | ||| Sbjct 234 GCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCGCGAAGCTGGCGAA 175 Query 82203 AAGCTGCATCCCCT---------CGCCGAAGGCCGAGAACACG---GCGATGTCGACCAT 82250 | |||| ||||| ||||||||| || || | | |||||||| Sbjct 174 CAATTGCAGCCCCTCGGTGAAGCCGCCGAAGGTCGCGAGCGTGCGCGCGATGTC------ 121 Query 82251 CAGGTCGGCGATCGAGTTGCCGCTGTCCCGATTGAACATGTACTCGTGCTTTTCGCGCAT 82310 | ||||| | |||| ||| | | | | | | | | |||||||| || ||| Sbjct 120 CTCGTCGGTG-TCGA-----CGCCGAACTGCTGG---AGGAAGTCGTGCTTGTCCTTCAT 70 Query 82311 CGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGA 82366 | ||||||| |||||||||||| | | || ||||||||| || | |||||||| Sbjct 69 CTCCTCGTATTCGAGGAAGGCGGAGTATTCCGCCTCGGGCATCCCGATGGTGTCGA 14 Score = 89.7 bits (98), Expect = 7e-13 Identities = 131/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 81703 TACTCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGGGGC-GTTCATGATCCAGTC 81761 ||||| |||||||| |||||||||||||| ||| ||| || | ||| ||| | | Sbjct 599 TACTCGGTCGAGCGGGCCTCGAAGAAGTTGGCGTGC-TCGACGCCGCTCAGCATCGACTG 541 Query 81762 GAGCCAGTCGAACGGATTGTCCTTGACGCCGTA--GTTGGGCTTCAGGCCCAGTTGCAGC 81819 |||||| | ||| || ||||| || ||||| | | || ||| ||| || || Sbjct 540 CAGCCAGGGCAGCGGGTTTTCCTTCACCCCGTACAGCTCGGG--CAGCTTCAGCTGGCGC 483 Query 81820 AGTCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCCCTCG 81879 || || | ||||||||| |||||||||| |||| ||||||||||||| | ||||| | Sbjct 482 AGCCGCCAGTCGGCGATAAAGCGGATGTAGGCCTTGATGTCCTCGGGCGTCATGCCCTGG 423 Query 81880 A 81880 | Sbjct 422 A 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700302741039000