Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq8540 194 2e-44 seq11271 168 1e-36 >seq8540 Length=3320 Score = 194 bits (214), Expect = 2e-44 Identities = 423/626 (68%), Gaps = 18/626 (3%) Strand=Plus/Plus Query 86297 TCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGTTGACCGCATTGTGCAGG 86356 |||| | ||||||||||||| |||||| | |||| || || | | ||||||| Sbjct 102 TCGGCGCCGTCGCGCACCGCTTCCATGAAGGCATCGGGGATCAGCACGCCGTGGTGCAGG 161 Query 86357 TTGGTGATCTTGCGGTTGTGGTCCCCGCCCGTCGGCTTGCGCGCGGTGATGAACTCGCGG 86416 || |||||||||| || ||| | | | || | || | |||||| | Sbjct 162 TTCAGCGCCTTGCGGTTGAAATCGCCGGAGGGCTTCCTGATCTCG---AGGAACTCCTCG 218 Query 86417 ATTTCGGGGTGGTGGATGTCCAGGTAGACGGCGTTGGAGCCCCGGCGCGTACCGCCCTGG 86476 || |||||||| |||||| || ||| |||| ||||| || ||| ||||||| Sbjct 219 ATCTCGGGGTGCGAGATGTCGAGATAGCAGGCGGCCGAGCCGCGCCGCAGCGAGCCCTGG 278 Query 86477 CTGACGGCCAGGATCAGGCGGTCGTCCACCGCCATGAACGGGATGACGCCGGTCGACTGC 86536 |||| ||||| |||||| ||| ||| | ||| ||||||| ||| | | || Sbjct 279 CTGATCGCCAGCGTCAGGCTGTCCATCACGCGGACGAAGGGGATGATCCCGCTGGTCTTG 338 Query 86537 GAACCCTTGGAGGTCTTC----TCGCCCAGGCCGCGCAGGGCGCCGTAATAGGAGCCGAT 86592 || | |||| | | ||||| | ||||||| ||| |||||| |||||| Sbjct 339 ----CCGTTGAGGCCGACCGGCTCGCCGATCCCGCGCACATTGCCCCAATAGGTGCCGAT 394 Query 86593 GCCGCCGCCCATCGACGACAGCCAGATGACCTCGTCATAG-TGCTCGGAGATCGACTCGC 86651 |||||||||| | || | ||||||| | ||||| || ||| || ||| ||| Sbjct 395 GCCGCCGCCCTTGGAGGCGAGCCAGACGTTCTCGTTCCAGGTGC-CGACGATGCCTTCGA 453 Query 86652 GGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAGGCCACGGGCCGAGCCGCCGT 86711 ||||||| | || | |||| |||| |||||||| || || ||| | |||||||| Sbjct 454 GGCTGTCGGACACCGAGTTGAGATAGCACGAGATCGGAAGACCCCGGTTGGTGCCGCCGT 513 Query 86712 TCGACAGCAGCGGGGTGGCGTACATGAACCAGAGGTTCGAGACGTATTCGTACAGACGCT 86771 |||| |||| |||||| ||| ||||||||| |||||||||| ||| ||||| || |||| Sbjct 514 TCGAAAGCACCGGGGTCGCGGGCATGAACCACAGGTTCGAGATGTAGTCGTAGAGCCGCT 573 Query 86772 GGCCGTGCTCGGCGTCATCCGCAAAGGCCGCACTCG-CGCGCGCGAAGGCCTCCTGGGGG 86830 || ||||| | |||| || ||| |||| | | || ||||||||||| |||| | Sbjct 574 GGGCGTGCGCCTCGTCGTCGGCATAGGCATC-CGCGACGCGCGCGAAGAGATCCT---GA 629 Query 86831 GAAGTTTCCCCAGGCAGCAGATAGCGTTCACGGAGGGTCTGAAGGGTGAAGTCGTCGAGC 86890 | || || || ||||| || ||||| || ||||| | | ||| ||| ||| Sbjct 630 TAGGTCTCGCCGGGCAGGAGGTAGCGGTCGGTCAGGGTTTCCTTGCCGAACTCGGTGAGA 689 Query 86891 AGGGCGTCGCGGGTGAGATCGATCTT 86916 ||||||||| | | |||| |||| Sbjct 690 TTGGCGTCGCGCGCGGCATCGGTCTT 715 >seq11271 Length=669 Score = 168 bits (186), Expect = 1e-36 Identities = 413/606 (68%), Gaps = 34/606 (6%) Strand=Plus/Minus Query 83157 TACTCGGTCGAGCGCTGCTCGAAGAAGTTGGCGTGGGTCGGGGC-GTTCATGATCCAGTC 83215 |||||||||||||| |||||||||||||||||| ||| || | ||| ||| | | Sbjct 599 TACTCGGTCGAGCGGGCCTCGAAGAAGTTGGCGTGC-TCGACGCCGCTCAGCATCGACTG 541 Query 83216 GAGCCAGTCGAAGGGGTTCTCCTTCTGGCCGTAG---TTGGGCTTCATGCCCAGTTGCAG 83272 |||||| | ||||| |||||| ||||| | |||| | | ||| || | Sbjct 540 CAGCCAGGGCAGCGGGTTTTCCTTCACCCCGTACAGCTCGGGCAGCTT---CAGCTGGCG 484 Query 83273 CCACCGGCGGTCGGCGATGTAGCGGATGTACTTCTTGGTGTCCTCGGGCGTGACGCCGTC 83332 | ||| | ||||||||| |||||||||| |||| ||||||||||||| | ||| | Sbjct 483 CAGCCGCCAGTCGGCGATAAAGCGGATGTAGGCCTTGATGTCCTCGGGCGTCATGCCCTG 424 Query 83333 GACCTCGCCCAGGGCGAAGGCTTGGTCGATGAAGGCGTCTTCCAGGTCGACCATCCGGC- 83391 ||| ||||| ||||||| ||||||||||| |||||||||| | |||| ||| | Sbjct 423 GACGTCGCCGGCCTCGAAGGCCAGGTCGATGAAGCGGTCTTCCAGGCCCACCA-CCGTCT 365 Query 83392 GGCCGGCGTCGTAGATGCGCTTCTTGGTCTCGTCGTT--CCAGGCGCGCGGGTGCTCCTT 83449 || | |||| |||| | | || | | | || || ||||| ||| ||| Sbjct 364 TGCAGCAGTCGACGATG---TCGTCGGCCACCGCCTTGGTCA-CCGCGCCGGT-CTCGGC 310 Query 83450 GATCAACTCGTGCAGGAGCTTGATCATGCTCTCGACGTGGTGGGTCTCGTCGCGGATCGA 83509 | | || |||| |||||||| |||| ||| ||| || |||||||||| | ||| Sbjct 309 GTTGAAGGCGTGGTACAGCTTGATGATGCCTTCGCAGTGCAGGCTCTCGTCGCGCACCGA 250 Query 83510 CCACTCGACGATCGTGGTCATGCCCTTCATCAGGCCGCGCCGCTGGTAGTTCATCAGCAG 83569 |||| ||||||| | ||||||||||||| | | ||| || |||||||||||| Sbjct 249 CCACGAGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCAT 190 Query 83570 GGCGAACGAGGAGAAAAGCTGCATGCCTTCGCCGAAG--GCCG-AGAACACG-GCGATG- 83624 ||||| || ||| | |||| || ||| |||| |||| || | || ||| || Sbjct 189 CGCGAAGCTGGCGAACAATTGCAGCCCCTCGGTGAAGCCGCCGAAGGTCGCGAGCG-TGC 131 Query 83625 --TCGACGATCAGGTCGGCGATCGACGTGCCGCTCTCGCGCTCGAACATGTACTCGTGCT 83682 ||| | | ||||| | ||||| |||| || ||| | | | | ||||||| Sbjct 130 GCGCGATGTCCTCGTCGGTG-TCGAC--GCCGAACT---GCTGG---AGGAAGTCGTGCT 80 Query 83683 TTTCACGCATCGCCTGATAGTCCAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGG 83742 | || |||| ||| || || ||||||||| | | || ||||||||| || | || Sbjct 79 TGTCCTTCATCTCCTCGTATTCGAGGAAGGCGGAGTATTCCGCCTCGGGCATCCCGATGG 20 Query 83743 TGTCGA 83748 |||||| Sbjct 19 TGTCGA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715630831680000