Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq8540 178 2e-39 seq11271 100 4e-16 seq8877 89.7 7e-13 seq3948 89.7 7e-13 >seq8540 Length=3320 Score = 178 bits (196), Expect = 2e-39 Identities = 436/654 (67%), Gaps = 18/654 (3%) Strand=Plus/Plus Query 86290 GCCGGTCTTGGGCGAACGCAGGGCGAACTCGGTGTCGTCGCGCACCGCGATCATGAACTC 86349 |||| ||| ||||| ||| | | |||| | ||||||||||||| |||||| | Sbjct 74 GCCGTCCTTCGGCGACGTCAGTTCCCATTCGGCGCCGTCGCGCACCGCTTCCATGAAGGC 133 Query 86350 GTCGGTGACGTTGACGGCGTTGTGCAGATTGGTGATCTTGCGGTTCTGGTCGCCGCCGGT 86409 |||| || ||| ||| |||||| || ||||||||| |||||| || Sbjct 134 ATCGGGGATCAGCACGCCGTGGTGCAGGTTCAGCGCCTTGCGGTTGAAATCGCCGGAGG- 192 Query 86410 CGGCTTGCGGGCCGTGATGAACTCGCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGC 86469 |||| | | | || |||||| ||| || ||||| |||||| |||||| ||| Sbjct 193 --GCTTCCTGATCTCGAGGAACTCCTCGATCTCGGGGTGCGAGATGTCGAGATAGCAGGC 250 Query 86470 GTTGGAGCCCCGGCGCGTGCCGCCTTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGC 86529 | ||||| || ||| ||| ||||||| || || |||||| || ||| Sbjct 251 GGCCGAGCCGCGCCGCAGCGAGCCCTGGCTGATCGCCAGCGTCAGGCTGTCCATCACGCG 310 Query 86530 CATGAACGGGATCACGCCGGTCGACTGCGAACCCTTCGAGGTCTTC----TCGCCCAGGC 86585 | ||| ||||| | ||| | | || || | |||| | | ||||| | | Sbjct 311 GACGAAGGGGATGATCCCGCTGGTCTTG----CCGTTGAGGCCGACCGGCTCGCCGATCC 366 Query 86586 CGCGCAGGGCGCCGTAGTAGGAGCCGATGCCGCCGCCCATCGACGAGAGCCAGATAACCT 86645 |||||| ||| | |||| |||||||||||||||| | || | |||||||| || Sbjct 367 CGCGCACATTGCCCCAATAGGTGCCGATGCCGCCGCCCTTGGAGGCGAGCCAGACGTTCT 426 Query 86646 CGTCATAG-TGCTCGGAGATCGACTCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAG 86704 ||| || ||| || ||| ||| ||||||| | || | |||| |||| ||| Sbjct 427 CGTTCCAGGTGC-CGACGATGCCTTCGAGGCTGTCGGACACCGAGTTGAGATAGCACGAG 485 Query 86705 ATCGGCAGGCCGCGCGCGGACCCGCCGTTCGACAGCAGGGGCGTGGCGAACATGAACCAG 86764 ||||| || || || || ||||||||||| |||| || || ||| ||||||||| Sbjct 486 ATCGGAAGACCCCGGTTGGTGCCGCCGTTCGAAAGCACCGGGGTCGCGGGCATGAACCAC 545 Query 86765 AGGTTCGAGACATAGTCGTAGAGCCGCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCA 86824 |||||||||| |||||||||||||||||| ||||| | |||| || || |||| | Sbjct 546 AGGTTCGAGATGTAGTCGTAGAGCCGCTGGGCGTGCGCCTCGTCGTCGGCATAGGCATC- 604 Query 86825 CTCG-CGCGCGCGAAGGCCTCCTGGGGCGAGCTTTCCCCAGGCAGCAGATAGCGTTCACG 86883 | || ||||||||||| |||| | || | || || ||||| || ||||| || Sbjct 605 CGCGACGCGCGCGAAGAGATCCT---GATAGGTCTCGCCGGGCAGGAGGTAGCGGTCGGT 661 Query 86884 GAGGGTCTGAAGGGTGAAGTCGTCGAGCAGGGCGTCGCGGGTGAGATCGATCTT 86937 ||||| | | ||| ||| ||| ||||||||| | | |||| |||| Sbjct 662 CAGGGTTTCCTTGCCGAACTCGGTGAGATTGGCGTCGCGCGCGGCATCGGTCTT 715 >seq11271 Length=669 Score = 100 bits (110), Expect = 4e-16 Identities = 202/296 (68%), Gaps = 29/296 (10%) Strand=Plus/Minus Query 83493 AGCTTGATCATCGACTCCAC-GTGATGGCTCTCGTCGCGGATCGACCACTCGACGATCGT 83551 |||||||| || | || | | ||| ||||||||||||| | ||||||| ||||||| Sbjct 293 AGCTTGATGAT-GCCTTCGCAGTGCAGGCTCTCGTCGCGCACCGACCACGAGACGATCTG 235 Query 83552 GGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGGCGAAGGACGAGAA 83611 | |||||||||||| |||| |||| ||||| |||||||| |||||| | ||| Sbjct 234 GCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCGCGAAGCTGGCGAA 175 Query 83612 AAGCTGCATCCCCT---------CGCCGAAGGCCGAGAACACG---GCGATGTCGACCAT 83659 | |||| ||||| ||||||||| || || | | |||||||| Sbjct 174 CAATTGCAGCCCCTCGGTGAAGCCGCCGAAGGTCGCGAGCGTGCGCGCGATGTC------ 121 Query 83660 CAGGTCGGCGATCGAGTTGCCGCTGTCCCGATTGAACATGTACTCGTGCTTCTCGCGCAT 83719 | ||||| | |||| ||| | | | | | | | | |||||||| || ||| Sbjct 120 CTCGTCGGTG-TCGA-----CGCCGAACTGCTGG---AGGAAGTCGTGCTTGTCCTTCAT 70 Query 83720 CGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGA 83775 | ||||||| |||||||||||| | | || ||||||||| || | |||||||| Sbjct 69 CTCCTCGTATTCGAGGAAGGCGGAGTATTCCGCCTCGGGCATCCCGATGGTGTCGA 14 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 83112 TACTCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGGGGC-GTTCATGATCCAGTC 83170 ||||| |||||||| |||||||||||||| ||| ||| || | ||| ||| | | Sbjct 599 TACTCGGTCGAGCGGGCCTCGAAGAAGTTGGCGTGC-TCGACGCCGCTCAGCATCGACTG 541 Query 83171 GAGCCAGTCGAACGGATTGTCCTTGACGCCGTA--GTTGGGCTTCAGGCCCAGTTGCAGC 83228 |||||| | ||| || ||||| || ||||| | | || ||| ||| || || Sbjct 540 CAGCCAGGGCAGCGGGTTTTCCTTCACCCCGTACAGCTCGGG--CAGCTTCAGCTGGCGC 483 Query 83229 AGCCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCCCTCG 83288 ||||| | ||||||||| |||||||||| |||| ||||||||||||| | ||||| | Sbjct 482 AGCCGCCAGTCGGCGATAAAGCGGATGTAGGCCTTGATGTCCTCGGGCGTCATGCCCTGG 423 Query 83289 A 83289 | Sbjct 422 A 422 >seq8877 Length=534 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 182418 CTACGTGTTCGGGGACATCCACGGCCGCCTCGACCTCCTGGAGAAGGCGCGGCACGAAAT 182477 ||||| |||| ||||||||||||||||||||||| ||| | ||||| || | | Sbjct 433 CTACGCCATCGGCGACATCCACGGCCGCCTCGACCTGCTGCGGCAGGCGGCGCTGAAGGT 374 Query 182478 C--CGTGTACGCGG-CGACTGCACGCAG---ATGATCTTCCTCGGGGACTATGTCGATCG 182531 | || | |||||| || | |||| || ||| ||| || |||||||||||||| Sbjct 373 CGCCGCGCACGCGGGCGGGCGGGCGCACCGCATCGTCTGCCTGGGCGACTATGTCGATCG 314 Query 182532 CGGTCCCGAGAGCAAGGGCGTCGTCGAGGCCGTGATG-GCGCTCCAGGCGCAGG--GCGA 182588 ||||||||| ||| ||||||| |||| | | ||| ||| | | || || || Sbjct 313 CGGTCCCGACAGCCGGGGCGTCATCGAATTCCTCATGCGCGAGACGGCGGCCGGTCGCTG 254 Query 182589 GATCGCCCTGATGGGCAACCATGAGGAACTGATGCTG 182625 ||| ||| | |||||| ||||||| |||||||| Sbjct 253 CATCTGCCTCAAGGGCAATCATGAGGCCATGATGCTG 217 >seq3948 Length=1342 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 54534 CGGCAAGATCGAGTTCGCCTCGTTCGAGCACATGCGCGGCCGGACCTTCGCCGAGTGCTG 54593 |||| |||||||| |||| | ||| ||||||||| ||||| | || || ||| Sbjct 338 CGGCGAGATCGAGATCGCGCCCATCGCCTTCATGCGCGGGCGGACGCTGGCGGACAGCTT 279 Query 54594 CGTCCTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCG 54653 | || |||||||||||||||||||| || | || | |||||||| |||||||||| Sbjct 278 CATCATCCTCGACGAGGCGCAGAACACCACGCGCGAGCAGATGAAGATGTTCCTGACCCG 219 Query 54654 CTGGGGCGAGAAC-GCCCAATACGCGGTCACCGGCGACATCGACCAGATCGACGTC 54708 || ||| ||||| ||| || | | || ||||||| | |||| ||||| || Sbjct 218 CTTCGGCCAGAACAGCCGGAT-GGTGATCTGCGGCGACCCCCGCCAGGTCGACATC 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709577659588000