Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq8540 187 3e-42 seq11271 98.7 1e-15 seq8859 86.0 9e-12 seq3948 86.0 9e-12 >seq8540 Length=3320 Score = 187 bits (206), Expect = 3e-42 Identities = 438/654 (67%), Gaps = 18/654 (3%) Strand=Plus/Plus Query 85447 GCCGGTCTTGGGCGAGCGCAGGGCGAACTCGGTGTCGTCGCGCACCGCGATCATGAACTC 85506 |||| ||| ||||| ||| | | |||| | ||||||||||||| |||||| | Sbjct 74 GCCGTCCTTCGGCGACGTCAGTTCCCATTCGGCGCCGTCGCGCACCGCTTCCATGAAGGC 133 Query 85507 GTCGGTGACGTTGACGGCGTTGTGCAGGTTGGTGATCTTGCGGTTCTGGTCGCCGCCGGT 85566 |||| || ||| ||| ||||||||| ||||||||| |||||| || Sbjct 134 ATCGGGGATCAGCACGCCGTGGTGCAGGTTCAGCGCCTTGCGGTTGAAATCGCCGGAGG- 192 Query 85567 AGGCTTGCGGGCCGTGATGAACTCGCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGC 85626 |||| | | | || |||||| ||| || ||||| |||||| |||||| ||| Sbjct 193 --GCTTCCTGATCTCGAGGAACTCCTCGATCTCGGGGTGCGAGATGTCGAGATAGCAGGC 250 Query 85627 GTTGGAGCCCCGGCGCGTGCCGCCTTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGC 85686 | ||||| || ||| ||| ||||||| || || |||||| || ||| Sbjct 251 GGCCGAGCCGCGCCGCAGCGAGCCCTGGCTGATCGCCAGCGTCAGGCTGTCCATCACGCG 310 Query 85687 CATGAACGGGATCACGCCGGTCGACTGCGAACCCTTCGAGGTCTTC----TCGCCCAGGC 85742 | ||| ||||| | ||| | | || || | |||| | | ||||| | | Sbjct 311 GACGAAGGGGATGATCCCGCTGGTCTTG----CCGTTGAGGCCGACCGGCTCGCCGATCC 366 Query 85743 CGCGCAGGGCGCCGTAGTAGGAGCCGATGCCGCCGCCCATCGACGAGAGCCAGATGACCT 85802 |||||| ||| | |||| |||||||||||||||| | || | |||||||| | || Sbjct 367 CGCGCACATTGCCCCAATAGGTGCCGATGCCGCCGCCCTTGGAGGCGAGCCAGACGTTCT 426 Query 85803 CGTCATAG-TGCTCGGAGATCGACTCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAG 85861 ||| || ||| || ||| ||| ||||||| | || | |||| |||| ||| Sbjct 427 CGTTCCAGGTGC-CGACGATGCCTTCGAGGCTGTCGGACACCGAGTTGAGATAGCACGAG 485 Query 85862 ATCGGCAGGCCGCGCGCGGACCCGCCGTTCGACAGCAGGGGCGTGGCGAACATGAACCAG 85921 ||||| || || || || ||||||||||| |||| || || ||| ||||||||| Sbjct 486 ATCGGAAGACCCCGGTTGGTGCCGCCGTTCGAAAGCACCGGGGTCGCGGGCATGAACCAC 545 Query 85922 AGGTTCGAGACATAGTCGTAGAGCCGCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCA 85981 |||||||||| |||||||||||||||||| ||||| | |||| || || |||| | Sbjct 546 AGGTTCGAGATGTAGTCGTAGAGCCGCTGGGCGTGCGCCTCGTCGTCGGCATAGGCATC- 604 Query 85982 CTCG-CGCGCGCGAAGGCCTCCTGGGGCGAGCTTTCCCCAGGCAGCAGATAGCGTTCACG 86040 | || ||||||||||| |||| | || | || || ||||| || ||||| || Sbjct 605 CGCGACGCGCGCGAAGAGATCCT---GATAGGTCTCGCCGGGCAGGAGGTAGCGGTCGGT 661 Query 86041 GAGGGTCTGAAGGGTGAAGTCGTCGAGCAGGGCGTCGCGGGTGAGATCGATCTT 86094 ||||| | | ||| ||| ||| ||||||||| | | |||| |||| Sbjct 662 CAGGGTTTCCTTGCCGAACTCGGTGAGATTGGCGTCGCGCGCGGCATCGGTCTT 715 >seq11271 Length=669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/288 (69%), Gaps = 13/288 (5%) Strand=Plus/Minus Query 82650 AGCTTGATCATCGACTCCAC-GTGGTGGCTCTCGTCGCGGATCGACCACTCGACGATCGT 82708 |||||||| || | || | | ||| ||||||||||||| | ||||||| ||||||| Sbjct 293 AGCTTGATGAT-GCCTTCGCAGTGCAGGCTCTCGTCGCGCACCGACCACGAGACGATCTG 235 Query 82709 GGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGGCGAAGGACGAGAA 82768 | |||||||||||| |||| |||| ||||| |||||||| |||||| | ||| Sbjct 234 GCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCGCGAAGCTGGCGAA 175 Query 82769 AAGCTGCATCCCCTCCCCGAAG--GCCG-AGAACACG-GCGATCTCGACCATCAGGTCGG 82824 | |||| |||||| |||| |||| || | || ||| | || | || ||| Sbjct 174 CAATTGCAGCCCCTCGGTGAAGCCGCCGAAGGTCGCGAGCGTGCGCG-CGAT---GTCCT 119 Query 82825 CGATCGAGTTGCCGCTGTCCCGATTGAACATGTACTCGTGCTTCTCGCGCATCGCCTCGT 82884 || | || | ||| | | | | | | | | |||||||| || |||| |||||| Sbjct 118 CGTCGGTGTCGACGCCGAACTGCTGG---AGGAAGTCGTGCTTGTCCTTCATCTCCTCGT 62 Query 82885 AGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGA 82932 | |||||||||||| | | || ||||||||| || | |||||||| Sbjct 61 ATTCGAGGAAGGCGGAGTATTCCGCCTCGGGCATCCCGATGGTGTCGA 14 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 82269 TACTCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGGGGC-GTTCATGATCCAGTC 82327 ||||| |||||||| |||||||||||||| ||| ||| || | ||| ||| | | Sbjct 599 TACTCGGTCGAGCGGGCCTCGAAGAAGTTGGCGTGC-TCGACGCCGCTCAGCATCGACTG 541 Query 82328 GAGCCAGTCGAACGGATTGTCCTTGACGCCGTA--GTTGGGCTTCAGGCCCAGTTGCAGC 82385 |||||| | ||| || ||||| || ||||| | | || ||| ||| || || Sbjct 540 CAGCCAGGGCAGCGGGTTTTCCTTCACCCCGTACAGCTCGGG--CAGCTTCAGCTGGCGC 483 Query 82386 AGCCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCCCTCG 82445 ||||| | ||||||||| |||||||||| |||| ||||||||||||| | ||||| | Sbjct 482 AGCCGCCAGTCGGCGATAAAGCGGATGTAGGCCTTGATGTCCTCGGGCGTCATGCCCTGG 423 Query 82446 A 82446 | Sbjct 422 A 422 >seq8859 Length=40362 Score = 86.0 bits (94), Expect = 9e-12 Identities = 185/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 148428 TGGTAGAAGCGCTCGGGCAGGCCGTCGATCTGCTCGACATTGAACACCAGATAGGACTTC 148487 ||||| || | ||||| || ||||||||||| ||| |||||| || || | || Sbjct 31347 TGGTAATAGTGATCGGGAAGCCCGTCGATCTGATCGCAATTGAAGACGGTGTACGTTTTG 31406 Query 148488 AGGAACGGGATCATC-CGTTCGACGTCCTTGCCGTTGGCGTCCTTCTCGGTCTTCTTGAA 148546 |||||||| || ||| || || | |||| ||| | |||||| ||||||| ||| |||| Sbjct 31407 AGGAACGGAAT-ATCGCGCTCCAATTCCTCGCCCTGCGCGTCCGTCTCGGTTTTCGTGAA 31465 Query 148547 CTTCGAGGCGTAGACGATCAGTTCGGACTTCTCGCCCTTGCGGACCTGACCACCCA--GG 148604 | || ||||||| | || | |||||||||||||| || | || | | Sbjct 31466 CCGGCTCGCATAGACGACCGTCGCGCCGGTTTCGCCCTTGCGGACTTGTGCGCCGATCTG 31525 Query 148605 TCCCTGGCTTGGTTGTAGGTCATCCAGGTCGGGTTGGTGTAGCCGCGCTCCTGGGCGGCG 148664 | || || || |||||||||||| ||| ||| | |||||| || || | Sbjct 31526 TGCC--GCCTGCCGATAGGTCATCCAGAGCGGTGCCGTGAACCCGCGCGCCAGGCTCTCC 31583 Query 148665 GCCCACAGGAGGACCACGTTGATCCCGGTGTA 148696 | |||||| | | |||||||| |||||||| Sbjct 31584 GACCACAGCAACAGGACGTTGATGCCGGTGTA 31615 >seq3948 Length=1342 Score = 86.0 bits (94), Expect = 9e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 53683 CGGCAAGATCGAGTTCGCCTCGTTCGAGCACATGCGGGGCCGGACCTTCGCCGAGTGCTG 53742 |||| |||||||| |||| | ||| |||||| || ||||| | || || ||| Sbjct 338 CGGCGAGATCGAGATCGCGCCCATCGCCTTCATGCGCGGGCGGACGCTGGCGGACAGCTT 279 Query 53743 CGTCCTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCG 53802 | || |||||||||||||||||||| || | || | |||||||| |||||||||| Sbjct 278 CATCATCCTCGACGAGGCGCAGAACACCACGCGCGAGCAGATGAAGATGTTCCTGACCCG 219 Query 53803 CTGGGGCGAGAAC-GCCCAATACGCGGTCACCGGCGACGTCGACCAGATCGACGTC 53857 || ||| ||||| ||| || | | || ||||||| | |||| ||||| || Sbjct 218 CTTCGGCCAGAACAGCCGGAT-GGTGATCTGCGGCGACCCCCGCCAGGTCGACATC 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701220954776000