Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq14742 298 6e-76 >seq14742 Length=52551 Score = 298 bits (330), Expect = 6e-76 Identities = 276/350 (79%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 163001 TCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAG 163060 |||| |||||||| ||||||||||| || |||||||| ||||| ||| | || || || | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 163061 GTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTA 163120 ||||||| ||||||||| | || ||| ||||||||||| | || ||||| ||| | | Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 163121 TCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAG 163180 || | ||||||||||| | || || ||| | || || || ||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 163181 AGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCAT 163240 | || ||||||||||| ||||| ||||| |||||||| || || |||||||| || || | Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 163241 CTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCT 163300 ||||||||||||| |||||| | ||||||||| | ||||| | || || || | || | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 163301 GGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTC 163350 |||||||||| | ||| | |||||||||||||||||| | ||||| ||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 241 bits (266), Expect = 1e-58 Identities = 254/332 (77%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||||||||| | ||||||||| || | |||| | || ||||||| Sbjct 12231 TCGGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCA 12172 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || |||||||||||||||||||||||||| | || || ||| | |||| Sbjct 12171 TCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTT 12112 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 || | | || || ||||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct 12111 CATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTG 12052 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | || ||||| || || |||||||| || || | ||||||||||| || || |||| Sbjct 12051 GTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTG 11992 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGG-AATCACAGCATACTGTGGTCGT 162837 | |||| |||| | | || | ||||||| | | || | | | || ||| |||||| Sbjct 11991 GTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGT 11933 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCG 162869 | |||||| | |||||||| ||||||||||| Sbjct 11932 GAATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 162865 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTC 162924 |||||||||||||| ||| || |||||||| ||||| | || || || || ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 162925 TTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGT 162984 | |||||||| |||| ||||||||||||||||| | |||||| | ||||| ||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 162985 ACTTTTAACTACATG 162999 ||||| |||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 104 bits (114), Expect = 3e-17 Identities = 113/146 (77%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 163349 TCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAG 163405 |||||||||||||||| || |||||| | |||| || | | | |||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAAC---ACTTGGGCAG 8229 Query 163406 ATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 | ||| | ||| | || |||| ||||||||||||||||||||||||||||| |||||| Sbjct 8228 ACATCATCAACCGTGCTA-ACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAAC 8170 Query 163465 TTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||| | ||| | || ||| ||| Sbjct 8169 TTCCCATTAGACTTAGCGTCTGTTGA 8144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552972627489000