Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9159 95.1 2e-14 seq3654 89.7 1e-12 seq2367 84.2 4e-11 >seq9159 Length=2836 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| |||||| |||| || | ||||||||||||||||||||| ||| || || Sbjct 1081 TTTGCCGAGCGCTTGGTGGCATATGCTGCTGTGGAGGGCATCTTCTTCTCAGGCAGCTTC 1140 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 |||||||||||||||||| || || ||||| || || ||| ||| ||| Sbjct 1141 TGTGCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCTGGCCTCACCTTCAGCAATGAG 1200 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||| || ||||| | || | ||| || | |||| || | |||| Sbjct 1201 CTCATCAGCAGAGATGAGGGATTGCATACAGACTTCGGCTGCTTGTTGTACA 1252 >seq3654 Length=3311 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 221937 ACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG 221996 ||| ||| || ||| ||| |||| || || | |||| ||||||||||| | Sbjct 1323 ACCTGGTGTACAGCTTGTTGAACTCCTCTCCCCAGACCTCTGCCAGGCCTGGAGCCTCAT 1382 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 ||| || | ||||||||||| | || | | || | || |||||| || || || Sbjct 1383 TGGGGCAGAACAGACTCCAGTCTTGGTCCTGCTCCACTCGCTTCATGAACAGATCATTGA 1442 Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116 |||| || | | || ||||| | || || | ||||||| ||||| ||| || | || Sbjct 1443 TCCAGAGGCCATAGAACAGATCACGGGCACGGTTCTCCTCCTTGCCGTGGTTCTTGCGCA 1502 Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGC 222165 | || | || ||||| ||||| |||||||| ||||| | ||||| ||| Sbjct 1503 GGTCAAGGAAGTCAAAGATGTCTGCGTGCCAGGGCTCAATATAGATGGC 1551 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 221701 TAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGAT 221760 |||||||| | |||| ||| ||||| || ||| || | |||| |||| | || Sbjct 913 TAGGGCAATGGATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGGTGTACTCCACAAT 972 Query 221761 CTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATT 221820 ||| || || ||||||||||||||||| || ||||||| | || || ||||| || Sbjct 973 CTCAGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTT 1032 Query 221821 GGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAA 221876 | ||| |||||||| ||||| |||| || || || | ||| ||| | |||| Sbjct 1033 GCAAGCATCCTTGTACAGCATGTAGGGGTTTCCTGTTTCAATCTGTGCCTCAAGAA 1088 >seq2367 Length=7310 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||||| ||| || ||| ||| ||||| || | ||| | | | || | ||| || Sbjct 363 CAGGTGCTGGTTGACAACTGTGAACTCTCCAGACAACACACGGCGCACATAGATGTTGGA 304 Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 ||| | || || | || ||||||||||||||||||||| |||||||| |||||||| Sbjct 303 TGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCTGTGGGCAT 244 Query 221227 GGGTGCCACCAGCAGACTGTTGCG 221250 || || || ||||| |||||| Sbjct 243 CGGGGCAACAAGCAGTGAGTTGCG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928656418664000