Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq14742 508 6e-139 seq7013 102 8e-17 >seq14742 Length=52551 Score = 508 bits (562), Expect = 6e-139 Identities = 725/1018 (71%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 9811 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTC 9870 ||||||||| | ||||||||| | | ||| || ||||| ||||| |||||||| Sbjct 37758 ATGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTC 37817 Query 9871 TGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTAC 9930 || || |||||||| || ||||||| ||||| |||| || ||| ||||||| || || Sbjct 37818 AGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAAC 37877 Query 9931 GTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTT 9990 ||||| || |||||||| || || | || | || | || ||| ||| || Sbjct 37878 TTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTT 37937 Query 9991 CCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 10049 | | ||||| ||||| ||||| ||||| | ||||| ||| ||| || || | ||| | Sbjct 37938 CTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTAT 37996 Query 10050 GGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTT 10109 |||| ||||| | || || || || || ||| || | || || || ||| | | Sbjct 37997 GGGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACAT 38056 Query 10110 TTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGG 10169 || | || | || ||| | |||| |||||| || ||||||||||| || ||||| | | Sbjct 38057 TTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 10170 CGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTT 10229 | | | | || | || || ||||||||||| || || || | ||||||| | |||| Sbjct 38117 CTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTT 38176 Query 10230 TTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTT 10289 |||| |||||| | || || ||| | ||||| ||| | ||||| ||||| || |||| Sbjct 38177 TTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTT 38236 Query 10290 TCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 10349 | || || || || |||||||| ||| || | || |||| ||||| ||||| ||||| Sbjct 38237 TTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTT 38296 Query 10350 TCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAA 10409 | || || ||||| |||||||| || || ||| | | |||| || || ||| || | Sbjct 38297 TAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTA 38356 Query 10410 TCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCA 10469 | ||||| | ||||| ||||||||| | | | ||||||| || || ||||| ||| Sbjct 38357 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTCC 38416 Query 10470 AAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCT 10529 || ||| | || |||| ||||| || || || ||||| || || |||||||||| Sbjct 38417 GTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCT 38476 Query 10530 GGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGT 10589 |||| || || ||||| ||||||| |||||||| |||||||| ||||| ||||| Sbjct 38477 GGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTC 38536 Query 10590 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 10649 |||| |||||| | |||||||||| || ||||||| | |||| | ||| | ||| Sbjct 38537 TTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATT 38596 Query 10650 TTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709 | |||||||| || || || || ||||| || | || | || ||||| ||||| || | Sbjct 38597 TACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAA 38656 Query 10710 CGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTG 10769 | ||||| || || ||||| || | || |||||| | ||||| |||||||| | | Sbjct 38657 CTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAG 38716 Query 10770 ACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACT 10827 |||||||||| ||| | |||| ||||| |||||||| | ||| | |||||||| || Sbjct 38717 ACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Score = 262 bits (290), Expect = 4e-65 Identities = 267/348 (77%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 8752 GTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGT 8811 || ||||| |||||||||||||| || |||||||| ||||||||| | |||||||||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 8812 GTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTT 8871 || || || || || | || || |||||||| |||||| | || ||||| || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 8872 CGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAA 8931 ||||| || || |||| ||| ||| ||| | || ||||| |||||||||||||| ||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 8932 ACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCT 8991 || ||||||||||| || || ||||| |||||||| || || ||||||||||| || ||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 8992 TTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGG 9051 || ||||| ||| | || || |||||| | ||||| ||||| || || || || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 9052 TTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTC 9099 || || || | || | || || ||||| |||||| | || || ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 248 bits (274), Expect = 9e-61 Identities = 286/383 (75%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 8238 TTGGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTT 8297 ||||| | |||||| |||||| | ||| || | || || || || |||| ||||| Sbjct 12281 TTGGGCACGTTTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTT 12222 Query 8298 TGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGT 8357 || ||| |||||||||| || | | | ||||| | ||||| | ||| ||| | Sbjct 12221 CGGTGTTATCATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCAT 12162 Query 8358 TGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTA 8417 ||||| ||||| || || ||||| || || || || |||||| |||| || | | || Sbjct 12161 CGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATA 12102 Query 8418 CGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTT 8477 ||| |||||||||||||||||||| |||||||| | || ||||| ||||| | || || Sbjct 12101 CGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTT 12042 Query 8478 CTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCA 8537 |||||| || |||||||| | ||| | ||||||||| | |||||||||||||||||||| Sbjct 12041 CTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 11982 Query 8538 GCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCT--TATATGGGTCGTGAATGGGAA 8595 | | |||| ||||||| || | || | |||||| || |||||||||||||||||| Sbjct 11981 ATTAATCGTTTGCCACTTCTTCTTAGG--TATTTGCTGCTACATGGGTCGTGAATGGGAA 11924 Query 8596 CTTTCTTACCGCCTTGGCATGCG 8618 | |||||||| | || ||||| Sbjct 11923 TTATCTTACCGTTTAGGTATGCG 11901 Score = 140 bits (154), Expect = 3e-28 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 8614 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTC 8673 |||||||||||||| ||| || ||||||||||| ||||| |||||| |||| |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 8674 CTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGT 8733 | |||||||| | || |||||||| |||||||||||||||||| | |||||||| || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 8734 ACGTTCAACT 8743 || ||||||| Sbjct 10357 ACTTTCAACT 10348 >seq7013 Length=29690 Score = 102 bits (112), Expect = 8e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 26912 GCGCAAGTGGCGGAATTGGTAGACGCCCAGGTTTTAGGTACCTGTGCCCTAGTGGCGTGA 26971 || || |||||||||||||||||||| ||||||| ||||||||||| || || ||||||| Sbjct 24974 GCCCAGGTGGCGGAATTGGTAGACGCGCAGGTTTCAGGTACCTGTG-CCGAGAGGCGTGA 25032 Query 26972 AGGTTCAAGTCCTTTCTTGCGCATCA 26997 |||||| ||||||||| || ||| || Sbjct 25033 AGGTTCGAGTCCTTTCCTGGGCACCA 25058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516375251400000