Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq9554 150 7e-32 seq15910 123 1e-23 seq12362 86.0 3e-12 >seq9554 Length=3714 Score = 150 bits (166), Expect = 7e-32 Identities = 325/478 (68%), Gaps = 11/478 (2%) Strand=Plus/Plus Query 54175 CTGGATTTGGACGGA-CACGAAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAACT 54233 |||||| ||| | || | |||| || |||||||||| | | ||||||||||| | Sbjct 471 CTGGATCTGGTCCGATCCCGAA-CGGACCGACCGGCTTGCCCGGGACTACAACGAGCGGT 529 Query 54234 TCAACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCGC 54293 ||||||||||||| ||||| ||| ||||| ||||| ||| || |||| ||| Sbjct 530 TCAACAACATCGCACCGCGAAGTTTCAACGGCGATCACCTTCAGCTTCCAGGCGCCTCG- 588 Query 54294 TGCG-CTTCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGGC 54352 ||| ||| || | | ||||||| |||| |||||||||| ||| || || Sbjct 589 GGCGCCTTTTCTCTTTATGGGCACCAGAAACGCGGCATCTGGCGCATCATCTCGGCGGGT 648 Query 54353 GATATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACCGGC 54412 | || ||||| ||||| |||||||| |||||||| | |||||| ||| | | | Sbjct 649 TCGACCTATCTCGCCCACGCCGTCGGCGCTGGCAAGACCATGACGATGGCGGCGGCAGTC 708 Query 54413 ATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTATGCGGTGCCGAACCACATG 54472 |||||| || ||||| || ||| | |||| ||||| | || || ||| Sbjct 709 ATGGAGCAGAAGCGGCTCGGGCTGATCGCCAAGGCGATGCTGGTCGTTCCCGGTCACTGC 768 Query 54473 CTCGCGCAGTTCGCGCGCGAGTTCCTTGAGCTGTACCCGGCCGCGAACATCATGGTCGCG 54532 ||||||||| |||||||||||||| | ||| |||||| |||| |||| | || || Sbjct 769 CTCGCGCAGGCGGCGCGCGAGTTCCTGGCGCTCTACCCGACCGCCCGCATCCTCGTTGCC 828 Query 54533 GACGAGCAGAATTTCCATACGCACAACCGCCGCCGGTTCGTCGCGCAGGCCG---CGCTC 54589 ||||| || ||| | | | || || | | ||| |||| | |||| || | Sbjct 829 GACGAAACCAACTTCACCAAGGATAAGCGACATCTCTTCCTCGCCCGCGCCGCCACGGCC 888 Query 54590 AATAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGGCCGCATCGGCATGTCCG 54647 ||| ||| |||||||||||||| || |||||||| || |||| ||| |||| Sbjct 889 AAT---TGGGATGCGATCATCATCACCCATTCGGCGTTTCGCTTCATCTCCAT-TCCG 942 Score = 136 bits (150), Expect = 2e-27 Identities = 345/513 (67%), Gaps = 19/513 (4%) Strand=Plus/Plus Query 55754 AAGGAGCGCCTGTTCGCGGACATGCGCGAGGGCAAAAAGCGCATCCTGATCGGCGGCAAG 55813 ||| |||||||||||| ||| | | ||||| || ||||||||||| | Sbjct 2044 AAGCAGCGCCTGTTCGGTGACGTCAATGCCGGCAAGGTCCGGTTCCTGATCGGCTCGTCG 2103 Query 55814 GA---CATGGAAACCGGCGTGAACGTGCAGAAGCGCCTCTACAGCGAGG-AGCATCTGGA 55869 || ||||| |||||||| |||| ||| ||||||| | ||| | | || || || Sbjct 2104 GAAACCATGGGCACCGGCGTCAACGCCCAGCTGCGCCTCAAG-GCGCTGCATCACCTTGA 2162 Query 55870 CGCGCCGTGGTTCCCGGCGTCCGTCGAGCAGCGCGAGGGGCGCATCATCCGCCAGGGCAA 55929 || ||| ||| | || || |||||||||| |||||||||||| ||| |||||||| Sbjct 2163 CGTGCCTTGGCTGCCCTCGCAAATCGAGCAGCGTGAGGGGCGCATCGGCCGGCAGGGCAA 2222 Query 55930 CCAGAACAAGCAGGTGCGCATCCGCGCGTGGGCGAC-GAAGGGCAGCTACGACAGCACGA 55988 ||| | | || | ||| ||| | ||||| ||||| ||| |||| ||| | Sbjct 2223 TCAGCATGACGAGATCGATATCTTCGCCTATGCGACGGAAGGCTCGCT-CGACGCCACCA 2281 Query 55989 TGTGGGGGATGAACGCCCGCAAGGCGCGGTTCATCGAACAGGCCCTCAACGGCGACGACA 56048 ||||| || |||| |||||||| || ||||||| |||||| ||||||| || Sbjct 2282 TGTGGCAGAACAACGAGCGCAAGGCCCGCTTCATCGCCGCGGCCCTTTCCGGCGAC-ACC 2340 Query 56049 GCG-TGCGCTCGCTCGAGGACGTGTCTGAAGCGTCGGC------GTTCGACATGGCCGCC 56101 || | ||| |||||||||| || || | ||| ||||| ||||||| Sbjct 2341 TCGATCCGCAGGCTCGAGGACATGGGCGAGGGCCAGGCCAACCAGTTCGCCATGGCCAAG 2400 Query 56102 GCGCTGGCGTCGGGCGACGAGCGCTATCTGAAGATGGCCGGCCTGAAGGCCGACGTCGAG 56161 ||| | |||||||||||| |||| || ||| ||| || || | ||||| ||| Sbjct 2401 GCGATCGCGTCGGGCGACCCGCGCCTGATGCAGAAGGCGGGGCTCGAAGCCGAAATCGCC 2460 Query 56162 CGCCTGGAGCGTCTGAGCTACGCGCACCACGACGACCAGAACAAGCTCCGGCGTGACAAG 56221 || |||||||| ||| | ||| || ||||| ||| | | |||||||| | | Sbjct 2461 CGGCTGGAGCGCCTGCGGGCCGCCCATATGGACGATCAGCATGCGGTCCGGCGTCAGATT 2520 Query 56222 CATTGGGCCGAGACGC-AGATCGAG--CGCGAC 56251 | |||||| |||| | |||||| |||||| Sbjct 2521 CGCGAGGCCGA-ACGCGACATCGAGATCGCGAC 2552 Score = 95.1 bits (104), Expect = 5e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 54862 CCACGAGTTCCGCAAACTCGACTTCGCGACGCAGCAGGGC-AACATCAAGGGCATCGACC 54920 ||| ||||||||||| ||| ||| || || || || | | | | | ||||| |||| | Sbjct 1152 CCAGGAGTTCCGCAAGCTCTCCTTTGCCAC-CAACATGTCGAGCTTGAAGGGAGTCGATC 1210 Query 54921 CGGCCGGCTCGCAACGCGCGATGGACCTGTTCATGAAGGCGCAGTACCTGCGCTCGAAGA 54980 || ||||||||| || ||| |||||| | | | ||| | | | | | | |||| Sbjct 1211 CGAACGGCTCGCAGCGGGCGTGGGACCTATACGTCAAGTCCCGCTTCGTTGAAACCAAGA 1270 Query 54981 AGCCGGGCCGCGCGCTCGTCGCCGCGTCGGGCACGCCGATCACGAACACGATGGGCGAGC 55040 | | ||||| ||||| || || |||||||| |||||||| |||||| | ||||| Sbjct 1271 ACCTCGGCCGTGCGCTGGTGCTGGCCTCGGGCACCCCGATCACCAACACGCTCGGCGAAA 1330 Query 55041 TGTTCACGGTGCAACGCTT 55059 ||||| ||||||| ||||| Sbjct 1331 TGTTCTCGGTGCAGCGCTT 1349 >seq15910 Length=10648 Score = 123 bits (136), Expect = 1e-23 Identities = 386/582 (66%), Gaps = 27/582 (5%) Strand=Plus/Minus Query 52229 ACGCAGTACGCGCACTACACCAGCGAGGGCGTGATCCGCTCGATCTACGACGGCCTGCGC 52288 |||||||||||||| | ||| ||| | | |||| | |||| ||| ||| Sbjct 1507 ACGCAGTACGCGCATTTCACGCCCGAATTCATCGTCCGGGCCATCTGGTCGGGCTTGCTG 1448 Query 52289 CGCCTGGGCTTTGCCGGCGGCAAGGTGCTTGAGCCGGGCATGGGTATCGGCCTGTTCAAG 52348 || || |||| ||||||| |||||| || || ||||| || | || ||||| Sbjct 1447 CGGCTCGGCTGGCGCGGCGGCCGGGTGCTCGAACCTGGCATCGGCACGGGGCTGTTTCCC 1388 Query 52349 GGGCTGATGCCCGACAGCATGGCCGCGACCAGCCAGTACACGGGCGTCGAGTACGACGCG 52408 | |||||||| ||| | || | || |||||| ||| ||||||||| ||| || Sbjct 1387 GCCCTGATGCCAGACGACCTGCGCCCGGTCAGCCATGTCACCGGCGTCGAGCTGGACCCG 1328 Query 52409 CTGACCGGCGCG-ATCGCGAAGATGCTGTATCCGCAGAGCAACATCATCGTC---GGCGA 52464 | |||| |||| ||||| |||| | || | || | ||||||| ||||| Sbjct 1327 GTTACCG-CGCGCATCGCCCGCCTGCTCCAGCCCC---GCGCCCGCATCGTCAATGGCGA 1272 Query 52465 CTTCACGAAAACCGCGATGCCGCGCGAGTTCTTCGACGCGGCGATCGGCAACCCGCCCTT 52524 ||| | ||||| | ||||| ||| || |||| |||||||||||| |||||||| Sbjct 1271 TTTCGCCCGAACCGAGCTGCCG-GCGCATT--TCGATCTGGCGATCGGCAATCCGCCCTT 1215 Query 52525 CGCGTCCG-TCGTCGTGACGAAT--GACCCCGAGTACAAGAAACAGGGGTTCATGCTGCA 52581 |||| ||| | | | |||| | ||| | || | |||||| Sbjct 1214 T---TCCGATCGCACGGTCCGTTCGGACCGGGCGTATCGCGGCCTCGGCCTGCGGCTGCA 1158 Query 52582 CGACTACTTCTTCGCCAAGACCATCGACCGCGTGAAGCCGGGCGGCATGCTCGTG---TT 52638 ||||| ||| ||| |||| | |||||||| |||| || ||||| ||||| | || Sbjct 1157 TGACTATTTCATCGTCAAGGCGATCGACCGGCTGAAACCCGGCGG---GCTCGCGGCTTT 1101 Query 52639 CGTCACCAGCAAGGGCACGATGGACAAGG-CGA-GCGACCGCGCGCGCCGCTACCTCGCC 52696 ||||||| || || ||||||||||||| ||| | |||||||| | | | | | || Sbjct 1100 CGTCACCTCCAGCGGGACGATGGACAAGGCCGATCCAACCGCGCGGGAAACGATCGC-CC 1042 Query 52697 GACCGCGCGAACCTGATCGGCGCCATGCGGCTGCCGCAGACCGCGTTCAAGGACAACGCC 52756 ||| | ||| | || ||| |||||| || |||||| || | ||| || | | ||| Sbjct 1041 GACAGGCCGATCTTG-TCGCCGCCATCCGCCTGCCGGAGGGCAGCTTCCGGGCCGAGGCC 983 Query 52757 GGCACGGAAGTCGTGACCGACGTGCTATTCCTCCAGAAGCGC 52798 |||||| | || ||| ||||| | || || ||| ||||||| Sbjct 982 GGCACGAACGTGGTGGCCGACATCCTCTTTTTCCGGAAGCGC 941 >seq12362 Length=960 Score = 86.0 bits (94), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 9845 GACCGAGTGGCACCGCGTCGCCTTCTTCGGCC---GCCTCGCCGAGATCGTCGACGAGCA 9901 |||||||||||||||||||| | ||||| | ||||| | || ||| ||| || Sbjct 27 GACCGAGTGGCACCGCGTCGTCATCTTCAACGAGGGCCTCTGCAAGGTCGCCGAGCAGTT 86 Query 9902 CCTGCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCAAAACGCGGAAGTGGCAGGA 9961 ||||||||||||| | |||||| ||||||| | | | || || ||||| | || Sbjct 87 CCTGCGCAAGGGCTCGAAGGTCTATGTCGAGGGCCAGCTGCAGACCCGCGAGTGGGAAGA 146 Query 9962 TCAATCCGGCCAGGATCGCTACACGACCGAGATCGT 9997 || ||||||| | |||||| |||||||| |||| Sbjct 147 CCAGAGCGGCCAGAAGCGCTACTCGACCGAGGTCGT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201281790226425