Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq5813 105 1e-17 seq2471 100 4e-16 >seq5813 Length=9432 Score = 105 bits (116), Expect = 1e-17 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 3799 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 3741 Query 169792 GTCAGTCCTGCCATTTTT 169809 |||| ||| |||| |||| Sbjct 3740 GTCACTCCCGCCACTTTT 3723 >seq2471 Length=3256 Score = 100 bits (110), Expect = 4e-16 Identities = 172/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGC-GCACAAATGCGCTTTGACCTGCA 122478 ||||| || ||||||||||| | ||| | |||||| |||| ||||||| || || | Sbjct 2919 GACCGGACCGGCACGGGCACGCGATCGCTGTTCGGCCGCACGC-TGCGCTTCGATCTCCG 2861 Query 122479 AAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTC-CGCTCCATCATCCATG-AG 122536 | || ||||||||| ||||||| || || || || ||| | | | | | | Sbjct 2860 CGACGGCTTCCCGCTGCTCACGACGAAGC-GGATCTTCTGGCGCGGCG-CGGCGACGGAA 2803 Query 122537 CTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGT 122596 || | |||||||| | ||| |||||||||| ||||| || || ||| ||||| Sbjct 2802 CTGATCTGGTTCCTGAGCGGCTCGACCAACATCCGCTATCTCAACGAGAACGGCGTCACG 2743 Query 122597 ATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||||||| || ||||| || || | || | ||||||||||| ||||| ||||| ||| Sbjct 2742 ATCTGGGACGAGTGGGCCGACGAGGCCGGCGAACTCGGCCCGGTCTACGGCAAGCAGTGG 2683 Query 122657 CG 122658 || Sbjct 2682 CG 2681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777474286510000