Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5098 89.7 3e-12 seq14742 87.8 1e-11 seq14182 87.8 1e-11 >seq5098 Length=1551 Score = 89.7 bits (98), Expect = 3e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| || |||||||| ||||| ||||| || || || || |||||| | || || Sbjct 810 GTGGAAATTATCGCCAATGATCAAGGAAATAGGACGACTCCCTCCTATGTTGCCTTCACG 751 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||||| | ||||||||| ||||| || || | || | |||| || ||| || Sbjct 750 GACACTGAGCGTCTTATTGGTGATGCAGCAAAGAACCAGGTTGCAATGAACCCTAGGAAC 691 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATT 474545 || | ||||| || || | ||||||||||| ||| Sbjct 690 ACAGTGTTTGACGCCAAGCGCATGATTGGTCGTCATT 654 >seq14742 Length=52551 Score = 87.8 bits (96), Expect = 1e-11 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 96878 GGACCATTAGCTCAATTGGT-AGAGCAATCGCCTGCAGAGCGAGAGGTTACTGGTTCAAG 96936 |||||||||||||| ||||| ||||| |||| || |||||||||| ||||||||||| Sbjct 2350 GGACCATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTCACTGGTTCAAG 2291 Query 96937 TCCAGTATGGTCC 96949 ||||||||||||| Sbjct 2290 TCCAGTATGGTCC 2278 >seq14182 Length=2243 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| | ||| ||||| ||||| || || | || || || || ||||| Sbjct 570 ACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGT 629 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| || || || || ||||| || || ||||||||||| || Sbjct 630 GCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACC 689 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| |||||||| |||||| ||||| || || || | | | || | Sbjct 690 CTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCA-CCTCCA 748 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || || ||||| || || ||||| Sbjct 749 GTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTG 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267483231026300