Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq14742 499 3e-136 seq1765 100 3e-16 seq14333 95.1 1e-14 >seq14742 Length=52551 Score = 499 bits (552), Expect = 3e-136 Identities = 728/1025 (71%), Gaps = 8/1025 (1%) Strand=Plus/Plus Query 162114 TGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 162173 |||||||||| | || |||||| | ||||||||| || ||||| || ||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 162174 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 162233 || ||||||||||| || ||||||| |||| ||||| |||||| ||||||| || ||| Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 162234 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 162293 || || || ||||| || || || | || ||| ||| | || ||| ||||| Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 162294 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT-ATG 162352 | || || || ||||| ||||| ||| || ||||| ||| ||| || | |||| ||| Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTATG 37997 Query 162353 GGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTT 162412 ||| ||||| | ||||| ||||| | || ||||| ||| | || || || ||||| || Sbjct 37998 GGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATT 38057 Query 162413 TGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC 162472 | | || | || ||| | || | | || || || ||| | || || |||||| | || Sbjct 38058 TATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTGC 38117 Query 162473 ACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGT 162529 || | ||| | | ||||| |||||||||||||||||||| | |||||| | || Sbjct 38118 TCGTTCAGTTAA---TTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGT 38174 Query 162530 ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTC 162589 || ||| ||||| | || || || || |||||||| |||||| || || || Sbjct 38175 TTTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAG 38234 Query 162590 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 162649 || || || ||||| || ||||| ||| | | || ||||||| |||||||||||||| Sbjct 38235 TTTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGAC 38294 Query 162650 GCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGC 162709 |||| || || ||||||||||| ||||||||| | | || | ||| | | | ||| Sbjct 38295 TTTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGC 38354 Query 162710 TATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTT 162769 |||||| || | || |||||||| ||| | | |||||||| || || ||||| || Sbjct 38355 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATT 38414 Query 162770 TAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTT 162829 |||||| || | ||||| | |||||||| || || ||||| || |||||||| || Sbjct 38415 CCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTT 38474 Query 162830 CTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCT 162889 |||||| || ||||| || ||||||| || || |||||| | || ||||| ||||| Sbjct 38475 CTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCT 38534 Query 162890 CTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAA 162949 ||||||| || | ||||| |||| |||| ||| | |||| | ||| | || Sbjct 38535 TCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAA 38594 Query 162950 TCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGA 163009 | | |||||||| ||||| || || |||||| ||||||| || || || || || || || Sbjct 38595 TTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGA 38654 Query 163010 GACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGT 163069 || ||||| ||||| || ||| || | |||||||| | || || ||| | || | Sbjct 38655 AACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCA 38714 Query 163070 GGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| ||||| |||| ||||||||||| || || || | || || ||||| Sbjct 38715 AGACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Query 163130 ATGAT 163134 || || Sbjct 38775 ATAAT 38779 Score = 280 bits (310), Expect = 2e-70 Identities = 271/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 161380 GTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 161439 || |||||||| |||||||||||||| |||||||| ||||| ||| | || || || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 161440 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTT 161499 || ||||| ||||| | ||| ||||||||||||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 161500 CGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 161559 |||||||| || |||||||| || ||| | || ||||| ||||||||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 161560 ACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCC 161619 || |||||||| || ||||| || || ||||| || ||| | || |||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 161620 TTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGG 161679 ||||||||||| || || | ||||||||| | ||||||||||| || ||||| || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 161680 TTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTC 161727 |||||||| | || | || |||||||||||| | || || ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 228 bits (252), Expect = 9e-55 Identities = 285/383 (74%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || |||||| | ||| | || || || || ||||| | || | ||||||||| Sbjct 12280 TGGGCACGTTTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTC 12221 Query 160927 GGCGTCCTGATGATTCCCTGC-TTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCG 160984 || || | ||||| |||| | || | | ||||| | ||| |||||||| || ||| Sbjct 12220 GGTGTTATCATGAT-CCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCA 12163 Query 160985 TTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGT 161044 | | ||| || || || || ||||| || |||||||| || || ||||||| | | | Sbjct 12162 TCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTAT 12103 Query 161045 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 161104 | ||||||||||||||||||||||||||| | ||| | || |||||||| ||| | || | Sbjct 12102 ACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATT 12043 Query 161105 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 161164 ||||||| || |||||||| || | | || || ||| | |||||||||||||||| || Sbjct 12042 TCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACC 11983 Query 161165 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAA 161223 || | | || | ||||||| | | || || | |||| ||||||||||||| |||||| Sbjct 11982 AATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGCT-ACATGGGTCGTGAATGGGAA 11924 Query 161224 CTTTCTTACCGTCTGGGAATGCG 161246 | ||||||||| | || ||||| Sbjct 11923 TTATCTTACCGTTTAGGTATGCG 11901 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 161242 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 161301 ||||||||||||||| ||||| ||||||||||| || || || || | |||||| ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 161302 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGT 161361 | |||||||| |||| ||||||||||||||||||| |||||| | || |||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 161362 ACGTTCAACTACATG 161376 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 161726 TCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACG 161785 ||||||||||||| || | ||||| ||| ||| || | ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 161786 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCC 161845 | ||||||||||| | || |||||||| ||||||||||| ||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 161846 CTCTTGACCTTGCTGCTGCTGA 161867 | | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 >seq1765 Length=25111 Score = 100 bits (110), Expect = 3e-16 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 17498 ACGGGATGTAGCGCAGCTTGGTAGCGCATATGCTTTGGGAGCATGGTGTCGCAGGTTCGA 17557 Query 157749 ATCCTGTCACCCCGACTTAT-CAAAACCATAAGT 157781 ||||||||| ||||| | || ||||| |||||| Sbjct 17558 ATCCTGTCATCCCGA-TAATAAAAAACTATAAGT 17590 >seq14333 Length=1560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 ||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 1037 CGGGGAGTAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCAGGTTCGAA 978 Query 157750 TCCTGTCACCCCGAC 157764 ||||||| ||||||| Sbjct 977 TCCTGTCTCCCCGAC 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547636110021000