Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq14742 221 4e-53 >seq14742 Length=52551 Score = 221 bits (244), Expect = 4e-53 Identities = 279/381 (73%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 18447 CGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGA-TGCCGAT 18505 |||||||||| | ||| | |||||||| || |||||||| || || | | || | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAA 11959 Query 18506 GAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGT 18565 || |||||| | || || | ||| || || || ||||| ||||||||||| || | | Sbjct 11960 GAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 12019 Query 18566 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGC 18625 || ||||||||| ||||||||||| || | ||| || ||||| |||| || || | || Sbjct 12020 TGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGC 12079 Query 18626 CCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685 || || |||||||||||||| || | ||| | || || || ||||||||||||||||| Sbjct 12080 ACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATC 12139 Query 18686 TATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAG 18745 || ||||| ||||| ||||| | || || || | ||| | | || || ||||| | Sbjct 12140 GATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGAAGTAGCTGTTAATAA 12199 Query 18746 TGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAAC 18805 || ||||||||| | || || ||||| || | ||| | ||||| | ||||| |||| Sbjct 12200 TGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAAT 12259 Query 18806 CCAGTCACATAAACTTTCCCA 18826 ||| ||||| |||| | |||| Sbjct 12260 CCATTCACAAAAACGTGCCCA 12280 Score = 185 bits (204), Expect = 3e-42 Identities = 251/350 (72%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 17966 GAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGT 18025 |||||| || | || || |||||||| || || || | || || | ||| || | | Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 18026 GACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTG 18085 || ||||||||||| |||||||| |||| | ||||| || ||| || || Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 18086 GAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTG 18145 |||||| | | |||||||| ||||| || || ||||| || || || ||||||||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 18146 GCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGA 18205 || ||||| ||||| | ||| ||| || ||||| ||||| | || | || || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 18206 AGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACC 18265 ||| || | |||||||| |||| |||||| | ||||| ||||| || |||||||| Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 18266 GAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGA 18315 | ||| ||||| || |||||||| || ||||| || |||||||| |||| Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAACGA 9283 Score = 107 bits (118), Expect = 6e-19 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 18317 CATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 18376 |||||| |||||||| || ||||| | ||||||||||||||||||| |||||||| Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 18377 AAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACAC 18435 | |||||| | || ||||||| || | |||||||| ||||| || || ||||| ||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTA-GCAGCTGCAACTGGAGCAGAGTAAGCTACAG 10461 Query 18436 AAATCCACGGGCGCAT 18451 |||||| || ||||| Sbjct 10462 CAATCCAAGGACGCAT 10477 Score = 87.8 bits (96), Expect = 5e-13 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 || ||||| |||| |||||||| || ||||||||||||||||||||||| | || | | Sbjct 8150 GACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATACCTAAG 8209 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||| ||||| || || || | ||| || | || | Sbjct 8210 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACTACT 8269 Query 17952 GATTGGTTGAAGTTGA 17967 |||||||||||||||| Sbjct 8270 GATTGGTTGAAGTTGA 8285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151289245200150