Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq14742 214 5e-51 >seq14742 Length=52551 Score = 214 bits (236), Expect = 5e-51 Identities = 256/348 (74%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 21602 GAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTAC 21661 ||| || || |||||||| ||||| || || | || | |||| ||||||||||| || Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 21662 AACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTG 21721 || ||||| ||||| | ||||| || | ||| || || || || ||| ||||| Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 21722 GAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTG 21781 |||||| | || ||||| || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 21782 ACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGA 21841 ||| || ||||| || | ||| || | | |||||| || ||||| || | || || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 21842 CGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACC 21901 || || | ||||||||| |||||||| || ||||||||||| || || ||||| Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 21902 CAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACAC 21949 | |||||| || || ||||||||||| ||||||||||| ||||| || Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 154 bits (170), Expect = 4e-33 Identities = 252/356 (71%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 22082 CCTCATCCCTAGTCGATA-GCTAAGTTCCCACTCTCGTCCCATGTA--AGCAAAGACGCC 22138 || ||| |||| || || | ||| |||||| || || |||||||| |||||| || | Sbjct 11900 CCGCATACCTAAACGGTAAGATAA-TTCCCATTCACGACCCATGTAGCAGCAAATAC--C 11956 Query 22139 AATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAG 22198 | || ||||||| | ||| | | |||| | ||||| |||||||| | ||| ||||| | Sbjct 11957 TAAGAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAA 12016 Query 22199 TGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGAC 22258 | | ||||||||||||||||||||| |||| || || || || | ||||| || Sbjct 12017 AGATGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAAC 12076 Query 22259 GGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCC 22318 || || || ||||||||||| || || || | || |||| || || || || || || Sbjct 12077 AGCACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACC 12136 Query 22319 ATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC-GGCAA 22377 |||||| ||||| || ||||| | | || ||||| || || || ||||| | || Sbjct 12137 ATCGATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGAAGTAGCTGTTAA 12196 Query 22378 GGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTA 22433 | | | || ||||| | || |||||||| || | || | |||||| | |||| Sbjct 12197 TAATGTA-GGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTA 12251 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 21953 CATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCC 22012 |||| ||||||| || || || || || || |||||| ||||||| ||||| || ||||| Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 22013 AAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAA 22072 | ||||| | | ||| || ||||| ||||| || || ||||||||||| || ||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 22073 GATCCAGGGCCTCATC 22088 ||||| || | |||| Sbjct 10463 AATCCAAGGACGCATC 10478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146179829830500