Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq14742 410 1e-109 >seq14742 Length=52551 Score = 410 bits (454), Expect = 1e-109 Identities = 725/1052 (69%), Gaps = 31/1052 (3%) Strand=Plus/Minus Query 122860 TATTGTTTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATG 122919 ||||| ||| || || ||||| | ||||| |||||||| |||||||||| | ||||| Sbjct 38784 TATTGATTATAGAGCATTACCACGAGGTAATACTTCTTCAGGGAATACAAGACGTTCATG 38725 Query 122920 CGGTTGGTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGT 122979 |||||||| | | |||||| || | || |||||||| | || ||| || || || Sbjct 38724 TGGTTGGTCTTGCGCAGCCATCCAAGCACGGATACCTTCATTTAAAATAATATTTTTTGT 38665 Query 122980 ATAGAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTA 123039 |||||||| ||||| || || || || ||||| | || ||||| || || ||||| || Sbjct 38664 GTAGAAAGTTTCGAATTCCGGATCCTCAGCTGCACGAATTTCTTGTGAAACGAAGTCATA 38605 Query 123040 TGCTCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGAC 123099 || | | || | |||| || || | ||| |||| ||| |||| | ||| | || Sbjct 38604 AGCACGTAAATTTAAAGCTAACCCAACTACACCAATAGCTGACATCCAAAGACCTACAAC 38545 Query 123100 AGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATAT 123159 |||||| | | ||| | |||||| | | | ||| || || || || | ||||| || Sbjct 38544 AGGAACAAGAAGCATGAAGAAGTGAAGCCAACGTTTATTTGAGAAAGCAACCCCAAAAAT 38485 Query 123160 CTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATC 123219 || |||||||| | ||||||||| | ||| ||||||||||| | ||||| || | Sbjct 38484 TTGAGACCAGAAACGGTTCGCTGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGGGTT 38425 Query 123220 GAATGCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATA 123279 ||||| | ||| || ||| ||| ||| || ||||| | Sbjct 38424 AAATGCACGGAATGTGTTAGC---------ACCGTCACCAT------------CTTCAAA 38386 Query 123280 CAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCC 123339 |||||||| | || || ||||| ||||| ||||||| || || | |||| | || Sbjct 38385 TAATGTGTTTTCAACAGTAGCACCGTGAATAGCACATAATAGAGCAGCTCCTAAAACACC 38326 Query 123340 TGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAA 123399 ||| |||||||||||||| ||||| || || || ||| ||||| ||||| | ||||| Sbjct 38325 TGCTACACCCATCATGTGGAATGGGTTTAAAGTCCAGTTATGGAAGCCTTGGAAAAATAA 38266 Query 123400 GATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACC 123459 || |||| || || ||||| ||||| || || || || ||||| | || || Sbjct 38265 AATGAAACGGAAAATAGCTGCTACACCAAAACTAGGAGCAAAAAACCAGCCAGATTGTCC 38206 Query 123460 TAGTGGATAGATCA-GAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTG 123518 || ||| || || | |||| || | || |||| ||| || ||||| || | | Sbjct 38205 TAATGGGTAAATTAAGAAAACTGAAACAAAA-ACTGAAATAGGCGCCGAGAAAGCAATAG 38147 Query 123519 CGTTGTAAGGTC-TAA--TGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAAC 123575 | ||||| || | ||| | || | | || || |||||||| | | ||| || | Sbjct 38146 CATTGTATGGACGTAAATTAACTGAACGA---GCAATTTCAAATTGACGTAACATAAATC 38090 Query 123576 CTATGAGTCC-AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAAC 123634 | || | || ||||| ||||||||| || | ||| |||||||||| || | ||| || Sbjct 38089 CAATTAAACCGAAAGA-TCCATGTAAAGCAATAAATGTCCATAGACCACCTAATTGACAC 38031 Query 123635 CAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATT 123694 |||||| || |||||||||||||||||||| | ||| | | | ||| |||| Sbjct 38030 CAACGAGTAAAGTCACCTTGTGCTTCAGGTCCCCATAAGAATAATAAAGAGTGAGCCATA 37971 Query 123695 GCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGAT 123754 || |||| || || || ||||||||||||||||| || || | ||||||||| Sbjct 37970 CTGTTTGCAGGAGTTGAAACAGCTGCTGTTAAGAAGTTACAACCTTCTAAATATGAAGAA 37911 Query 123755 GCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATT 123814 || | ||||||||| ||||||||||| || || || || || |||||||| || | | Sbjct 37910 GCTAAACCATGTGTGTACCATGATGTTACAAAAGTTGTACCAGTAAACCAACCTCCAAGT 37851 Query 123815 GATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCT 123874 | | ||| |||||||| | ||| | |||||| ||||| |||| ||||||||||| ||| Sbjct 37850 GCAAAATAAGCACAAGGGAAAAGAAGAAGACCTGACCAACCTACAAATACAAAACGGTCT 37791 Query 123875 CTCTTTAACCAGTCGTCAAGAACATCAAACCA 123906 ||||||||| || |||||||||| Sbjct 37790 TGACGTAACCAGTCATCTGCGTCATCAAACCA 37759 Score = 253 bits (280), Expect = 2e-62 Identities = 266/350 (76%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 124180 GAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATAC 124239 ||| || || |||||||||||||| || | ||||| | || || ||||| | || || Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 124240 AACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTG 124299 || || || | |||| ||||||||| | | ||||||||||| ||||| || || Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 124300 GAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTG 124359 |||||| | ||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 124360 TCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGA 124419 ||||| || || || | ||| || || | || || ||||| | ||||| ||| || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 124420 TGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCC 124479 || || | ||||| |||||||| |||||||| || || || || | || || || || Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 124480 TGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGA 124529 | ||||||||| || ||||| |||||||| ||||| ||||||||||||| Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAACGA 9283 Score = 232 bits (256), Expect = 8e-56 Identities = 253/331 (76%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 124661 CGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTG-AAATACCAAT 124719 ||||| ||||| | ||| |||| |||||| | | |||||||| || | ||||||| | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAA 11959 Query 124720 AAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGT 124779 | ||||||| ||| | || || ||||||||||| || || ||||| ||||| | || Sbjct 11960 GAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 12019 Query 124780 TGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGC 124839 || |||||||| ||||||||||| |||| || ||||||||||||| |||||||| || Sbjct 12020 TGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGC 12079 Query 124840 ACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTC 124899 |||||||||||||||||| || ||||| || ||||| | ||||| || | || || || Sbjct 12080 ACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATC 12139 Query 124900 GATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTA 124958 |||||| || |||||||| || || || || | |||||| ||| | | ||||| | || Sbjct 12140 GATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACA-GAAGTAGCTGTTAATA 12198 Query 124959 AGCATGGAATCATTAGAACACCAAACCAACC 124989 | || ||||| | |||||| |||||||| Sbjct 12199 ATGTAGGGATCATGATAACACCGAACCAACC 12229 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124531 CATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACC 124590 ||| ||||||||||| || |||||||| | ||||||||||||||||| ||||| || || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 124591 AAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACA 124650 | || || | | |||||| || ||||| | ||||| || || ||||| ||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 124651 GATCCAAGGACGCAT 124665 |||||||||||||| Sbjct 10463 AATCCAAGGACGCAT 10477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578880971887000