Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq14742 477 1e-129 >seq14742 Length=52551 Score = 477 bits (528), Expect = 1e-129 Identities = 675/944 (72%), Gaps = 10/944 (1%) Strand=Plus/Minus Query 23435 TTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATT 23494 ||| ||||||||||| | |||||| |||||| || | || || | |||||| Sbjct 38730 TTCATGTGGTTGGTCTTGCGCAGCCATCCAAGCACGGATACCTTCATTTAAAATAATATT 38671 Query 23495 TTTCGTGTAGAAGGTCTCATACGAA--CC--ATCTTCAGCAGCACGAATCTCTTGACTCA 23550 ||| |||||||| || || ||| || ||| ||||| |||||||| ||||| | Sbjct 38670 TTTTGTGTAGAAAGTTTC----GAATTCCGGATCCTCAGCTGCACGAATTTCTTGTGAAA 38615 Query 23551 CAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAA 23610 | || ||||||||||| | ||| | ||| | ||||| | ||||||| || | ||||| Sbjct 38614 CGAAGTCATAAGCACGTAAATTTAAAGCTAACCCAACTACACCAATAGCTGACATCCAAA 38555 Query 23611 GACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAA 23670 |||| | |||||||||| | ||| |||||||| | |||||| ||||| || |||| Sbjct 38554 GACCTACAACAGGAACAAGAAGCATGAAGAAGTGAAGCCAACGTTTATTTGAGAAAGCAA 38495 Query 23671 CCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCT 23730 |||| || ||||| ||||| ||||| || ||||| ||||| || || || || || | | Sbjct 38494 CCCCAAAAATTTGAGACCAGAAACGGTTCGCTGTTACCATTGAGTAAGTTTCTTCAGCTT 38435 Query 23731 GAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCT 23790 | || | | || || || ||||| || || ||||||||| | | ||| || | Sbjct 38434 GTGTTGGGTTAAATGCACGGAATGTGTTAGCACCGTCACCATCTTCAAATAATGTGTTTT 38375 Query 23791 CGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCA 23850 | |||||| | || ||||||||| | | || || |||| | | ||| || || |||| Sbjct 38374 CAACAGTAGCACCGTGAATAGCACATAATAGAGCAGCTCCTAAAACACCTGCTACACCCA 38315 Query 23851 TCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGA 23910 |||| ||||| ||||| | ||||||||||| ||||| |||| || | || ||| | || Sbjct 38314 TCATGTGGAATGGGTTTAAAGTCCAGTTATGGAAGCCTTGGAAAAATAAAATGAAACGGA 38255 Query 23911 AAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGA 23970 |||| || || ||||| ||||| || ||||| ||||| || ||||| || || || | Sbjct 38254 AAATAGCTGCTACACCAAAACTAGGAGCAAAAAACCAGCCAGATTGTCCTAATGGGTAAA 38195 Query 23971 TGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGAC 24030 | | ||| || || || || || | |||||| | || |||||||| |||||||| |||| Sbjct 38194 TTAAGAAAACTGAAACAAAAACTGAAATAGGCGCCGAGAAAGCAATAGCATTGTATGGAC 38135 Query 24031 GGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGG 24090 | | || | ||| || | |||||| |||||||||||||| || || | | || | Sbjct 38134 GTAAATTAACTGAACGAGCAATTTCAAATTGACGTAACATAAATCCAATTAAACCGAAAG 38075 Query 24091 CACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCC 24150 || || | ||||| ||| | ||| || || || | ||| ||| || |||||| | Sbjct 38074 ATCCATGTAAAGCAATAAATGTCCATAGACCACCTAATTGACACCAACGAGTAAAGTCAC 38015 Query 24151 CTTGAGACTCAGGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTC 24209 |||| | ||||| ||||| ||| | || || ||| ||| ||||| || ||||| || Sbjct 38014 CTTGTGCTTCAGGTCCCCATAAGAATAATAA-AGAGTGAGCCATACTGTTTGCAGGAGTT 37956 Query 24210 GAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTG 24269 || |||||||| || | |||||| ||| || | ||| ||| ||| | ||||| ||| Sbjct 37955 GAAACAGCTGCTGTTAAGAAGTTACAACCTTCTAAATATGAAGAAGCTAAACCATGTGTG 37896 Query 24270 TACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTG 24329 ||||| || ||||||| ||| ||||||| |||||| |||| |||| ||||||| Sbjct 37895 TACCATGATGTTACAAAAGTTGTACCAGTAAACCAACCTCCAAGTGCAAAATAAGCACAA 37836 Query 24330 GGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATC 24373 || | ||| || || || |||||||| ||||| ||||| || || Sbjct 37835 GGGAAAAGAAGAAGACCTGACCAACCTACAAATACAAAACGGTC 37792 Score = 280 bits (310), Expect = 2e-70 Identities = 271/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 26865 GAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAAC 26924 ||| ||||| | ||||| ||||| || || | ||| | || |||||||| || ||||| Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 26925 AACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTG 26984 || ||||| ||||| | ||||||||| || ||||| ||||||||||| ||||| ||||| Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 26985 GAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTG 27044 |||||| ||||| || ||||| |||||||| || || |||||||| || ||||||||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 27045 ACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGA 27104 |||||| || || || | ||| || || ||||||| || ||||||| | || || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 27105 TGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACC 27164 || || | |||||||| |||||||| | || ||||| ||||| ||||||||||| Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 27165 GAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212 | ||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 273 bits (302), Expect = 3e-68 Identities = 288/374 (77%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCA-TAGATGCCGAT 27404 |||||||||||||| || || | |||||| ||||| ||||| | |||| | || || | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGT-AGCAGCAAATACCTAA 11959 Query 27405 AAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGA 27464 | ||||||| | || | | |||| ||||||||||||| || ||||||||||| | || Sbjct 11960 GAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 12019 Query 27465 TGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGC 27524 || |||||||| ||||||||||| || | ||| || || ||||| | || ||||| || Sbjct 12020 TGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGC 12079 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 |||||| ||||||||||| || || | | |||||||| ||| || ||||||||||| || Sbjct 12080 ACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATC 12139 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACA 27643 ||||| || || ||||| |||||||| |||| ||||| |||| ||| |||| ||| | Sbjct 12140 GATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGA-AGTAGCTGTTAATA 12198 Query 27644 GTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGATGTCA 27703 ||| |||||||| | |||||||||||||| | || |||||||| | ||| || | Sbjct 12199 ATGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAA 12258 Query 27704 CCCACTCACAGAAA 27717 ||| ||||| ||| Sbjct 12259 TCCATTCACAAAAA 12272 Score = 149 bits (164), Expect = 8e-31 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27216 CATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACC 27275 |||| |||| ||||| ||||||||||| | ||||||| |||| |||||||||||||| || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 27276 GAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACA 27335 || |||||||| || |||||||||| | ||||| || ||||||||||| || |||||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 27336 GATCCATGGACGCAT 27350 ||||| |||||||| Sbjct 10463 AATCCAAGGACGCAT 10477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665359429417000