Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq14742 268 1e-66 >seq14742 Length=52551 Score = 268 bits (296), Expect = 1e-66 Identities = 283/370 (76%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 8505 CATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAG-AAATTCCAATAA 8563 ||||||||| ||||| ||||| ||||| | | ||||||||| |||| |||| || | | Sbjct 11903 CATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAAGA 11961 Query 8564 GGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGG 8623 ||||||| | | | || || || ||||| ||||| || |||||||||||||| | | Sbjct 11962 AGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGATG 12021 Query 8624 CAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCAC 8683 |||||||||||| || ||||| ||||| ||||||||||| || | ||||| ||||||| Sbjct 12022 AAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGCAC 12081 Query 8684 CAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGA 8743 ||||||||||||||||||| || | |||||||| | ||| || ||||||||||| |||| Sbjct 12082 CAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATCGA 12141 Query 8744 TATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGC 8803 |||| || || || ||||| || || || | ||| || || || ||| | ||| || Sbjct 12142 TATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGAAGTAGCTGTTAATAATG 12201 Query 8804 AAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCC 8863 ||| ||||| | ||| || |||||||||| || | | ||| | ||||| |||| || Sbjct 12202 TAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAATCC 12261 Query 8864 ACTCGCAAAA 8873 | || ||||| Sbjct 12262 ATTCACAAAA 12271 Score = 246 bits (272), Expect = 4e-60 Identities = 264/349 (76%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 8023 AATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACA 8082 |||||||| | ||| |||||||| || ||||||| | || ||| ||||||| || || Sbjct 8935 AATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 8994 Query 8083 ACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGG 8142 ||||| | | ||| | ||||||||| | | | |||||| || || || || ||| Sbjct 8995 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 9054 Query 8143 AAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGA 8202 |||||||| | |||||||| ||||| ||||| ||||| || || || |||||||||||| Sbjct 9055 AAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTGA 9114 Query 8203 CCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGAT 8262 || || || || || | ||| ||| || | |||||| || || | ||||| ||| || Sbjct 9115 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGAA 9174 Query 8263 GTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCT 8322 || ||||| ||||||||||| ||| ||| | ||| ||||| || | ||| || || ||| Sbjct 9175 GTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 9234 Query 8323 GCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGA 8371 ||| ||||| || |||||||||||||| ||||| |||||||| |||| Sbjct 9235 AACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAACGA 9283 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| |||| ||||||||||||||||||||||| ||||| | || ||||||||||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 |||||||| || | ||| | | ||| |||| || | | ||| | | ||| Sbjct 8204 CCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 8263 Query 8002 ACAACTGATTGGTTAAAGTT 8021 || ||||||||||| ||||| Sbjct 8264 ACTACTGATTGGTTGAAGTT 8283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8373 CATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACC 8432 ||||||||| || || ||||| ||||||| |||||| ||||||||||| ||||| || || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 8433 AAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACA 8492 | ||||| | | ||| ||||| |||||| | ||||||||| || |||||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 8493 GATCCATGGTCTCAT 8507 ||||| || | ||| Sbjct 10463 AATCCAAGGACGCAT 10477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615737495407000