Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq14742 482 3e-131 seq14161 100 3e-16 seq7727 82.4 9e-11 >seq14742 Length=52551 Score = 482 bits (534), Expect = 3e-131 Identities = 726/1025 (71%), Gaps = 10/1025 (1%) Strand=Plus/Plus Query 167011 TGGTTTGATGTCCTCGATGACTGGCT---TAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 |||||||||| | ||||||||| | | || || |||||||| ||||| || ||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAA---GACCGTTTTGTATTTGTAGGTTGG 37815 Query 167068 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 167127 || || ||||||||||| || ||||||| |||| |||| |||||| ||||||| || Sbjct 37816 TCAGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACA 37875 Query 167128 ACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAAC 167187 ||||| || || ||||| || ||||| | || || ||| | || ||| ||| Sbjct 37876 ACTTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAAC 37935 Query 167188 TTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTC-T 167246 || | || || || ||| ||||| ||| | ||||| ||| |||||| || ||| | Sbjct 37936 TTCTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCTTTA-TTATTCTT 37994 Query 167247 ATGGGGTCCTGAATCTCAAGGGGA-TTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGG 167305 |||||| |||||| | ||||| || ||| || | ||| ||| | || || || ||| Sbjct 37995 ATGGGGACCTGAAGCACAAGGTGACTTTACTC-GTTGGTGTCAATTAGGTGGTCTATGGA 38053 Query 167306 CTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAAC 167365 | ||| | || | || ||| | || | | | ||||| || ||| | || || |||||| Sbjct 38054 CATTTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAA 38113 Query 167366 TTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 167425 ||||||| || | | ||||| |||||||||||||||||||| | |||||| | | Sbjct 38114 TTGCTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAG 38173 Query 167426 TCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGT 167485 | || ||| |||||| | | || || | || ||| ||||||| ||||| || Sbjct 38174 TTTTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTA 38233 Query 167486 CCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGA 167545 || || || || || || ||||| ||| | | || ||||||| ||||| ||||||| Sbjct 38234 GTTTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGA 38293 Query 167546 CACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 167605 | | || ||||| || |||||||||||||||||| | | || | ||| | | | || Sbjct 38294 CTTTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTG 38353 Query 167606 CAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTT 167665 | || || |||| ||| || || || || || | |||||||||||| || ||||| | Sbjct 38354 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACAT 38413 Query 167666 TTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGAT 167725 | ||||| | | || || | ||||| ||||| |||||||| ||||| ||||| | Sbjct 38414 TCCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTT 38473 Query 167726 TCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGT 167785 |||||||||| || || || |||||||| || ||||| |||||||| ||||| ||| Sbjct 38474 TCTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGC 38533 Query 167786 TATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTA 167845 | | ||||| ||| | || ||||||| ||| | ||||| | |||| | ||| | | Sbjct 38534 TTCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAA 38593 Query 167846 ATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTG 167905 || | |||||||| || |||||||| ||||| || | || || |||||||| || || | Sbjct 38594 ATTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCG 38653 Query 167906 AAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTA 167965 |||||||||| || ||||| || || | ||||||||| | || || ||| | || | Sbjct 38654 AAACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGC 38713 Query 167966 TCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCAC 168025 || ||||| ||||| |||| ||||| || ||||| | || || || || || | Sbjct 38714 AAGACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTC 38773 Query 168026 TATAA 168030 ||||| Sbjct 38774 TATAA 38778 Score = 289 bits (320), Expect = 3e-73 Identities = 273/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 166273 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 166332 || ||||||||||||||||| ||||| ||||| || ||||| ||| | || |||||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 166333 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTT 166392 ||||||||||| || || ||| |||||||| || || ||||| ||| | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 166393 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 166452 | || || ||||||| |||||| ||| | || ||||| ||||| |||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 166453 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 166512 ||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 166513 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 166572 ||||||||||| || || || ||||||||| | ||||| ||||| || || || || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 166573 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTC 166620 ||||| || | || | || || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 250 bits (276), Expect = 3e-61 Identities = 280/372 (75%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 || || |||||| |||| || || | |||||| | || |||||||||| ||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || || | || |||| ||| |||| |||||| |||| ||||||||||| || Sbjct 12211 ATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || ||||| || || ||||| || || ||||||| | | || || ||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 ||||||||||||||| |||||||| | || ||||| |||||| |||| ||||| || || Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| |||| | || || ||| | || ||||||||||||| |||| | | || Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||||| | | || || | ||||||||||||||| |||||| | |||||||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 166128 TCTAGGTATGCG 166139 | |||||||||| Sbjct 11912 TTTAGGTATGCG 11901 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 166135 ATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTC 166194 |||||||| ||||| ||| |||||||| || ||||| || ||||| | |||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 166195 CTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGA 166254 | | |||||| |||| |||||| ||||||||||| ||||| | || ||||| ||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 166255 ACATTCAACTACATG 166269 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 166619 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 166678 ||||||||||||| || | |||| ||| |||||||| || ||||| |||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 166679 TTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 166738 | | ||||| ||| | ||||||||||||||||| |||||||| || |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 166739 CCCTCGACCTCGCTGCTGCTGA 166760 | | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| ||| ||||||| |||| || ||||||||||| || Sbjct 27993 TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATAGGCCGTAGGTTCAAGTC 27934 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 27933 CTACCTGGGGAG 27922 >seq14161 Length=2325 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||| ||||||||| || ||||| ||||||||||||||||| |||||||||||| ||| Sbjct 1279 TTCCTCGGTAGCTCAGTGGTAGAGCAATCGACTGTTAATCGATCGGTCGTAGGTTCGAAT 1220 Query 18188 CCTACCTGGGGAG 18200 |||||| |||||| Sbjct 1219 CCTACCCGGGGAG 1207 >seq7727 Length=1800 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 18136 TAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATCCTACCTG 18195 ||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||||| | Sbjct 1577 TAGCTCAGCGGTAGAGCATTCGACTGTTAATCGAATGGCCGTAGGTTCGAATCCTACTCG 1636 Query 18196 GGGAG 18200 ||||| Sbjct 1637 GGGAG 1641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561134171890000