Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq14742 214 5e-51 >seq14742 Length=52551 Score = 214 bits (236), Expect = 5e-51 Identities = 256/348 (74%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || ||||| ||||||||||| ||||||||||| || || |||||| | ||||| || || Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATT 41857 ||||||||||| || |||||||| ||||||||| | || || || || | || Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 41858 CGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 ||||| || |||||| | | || ||| | || ||||| || |||||||| ||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 41918 ACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGC 41977 || ||||| ||||| ||||| || || || ||||| || | ||||||||||| ||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 || || || || ||| | || ||||| | ||||| ||||| || || ||||||||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTC 42085 || |||| | || | || || ||||| |||||||| || || ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 154 bits (170), Expect = 4e-33 Identities = 252/356 (71%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 41254 TACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGC 41313 |||| | |||||| | || | || |||||||| || | ||||| || | | | || Sbjct 12251 TACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCC-TACATTATTAA 12193 Query 41314 C-GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372 | ||||| || || || ||||| || | | ||||| || ||||| |||||||| | Sbjct 12192 CAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTA 12133 Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432 | || || || || |||| || | || || || ||||||||||| || || || || | Sbjct 12132 TTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTG 12073 Query 41433 TTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTG 41492 |||| | || || || || |||| ||||||||||||||||||||| | | | | Sbjct 12072 TTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAG 12013 Query 41493 ATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCG 41552 |||| ||| | |||||||| ||||| | |||| | | ||| | ||||||| || | | | Sbjct 12012 ATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAG--G 11955 Query 41553 TCTTTGCT--TACATGGGACGAGAGTGGGAACTTAGC-TATCGACTAGGGATGAGG 41605 | |||||| |||||||| || || |||||| ||| | || || |||| ||| || Sbjct 11954 TATTTGCTGCTACATGGGTCGTGAATGGGAA-TTATCTTACCGTTTAGGTATGCGG 11900 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41599 GATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTT 41658 |||| | || ||||| ||| || ||||||||||| || || ||||| ||||| || || Sbjct 10478 GATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATT 10419 Query 41659 CCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGG 41718 | | | ||||| | ||||| || ||||| ||||||| |||||| || || || || || Sbjct 10418 CATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGG 10359 Query 41719 CACCTTCAACTACATG 41734 || ||||||| |||| Sbjct 10358 AACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146186228597400