Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq14742 242 1e-59 >seq14742 Length=52551 Score = 242 bits (268), Expect = 1e-59 Identities = 262/347 (76%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 42793 GTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGC 42852 || ||||| ||||| || |||||||||||||| || ||||| ||| | |||||||| || Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 42853 GTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTG 42912 ||||||||||| || || ||||| || ||||| ||| | || || || ||| | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 42913 CGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAG 42972 |||||||| |||||||||||| || | || ||||| ||||||||||| || || Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 42973 ACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCG 43032 || || |||||||| || || ||||||||||||||||| | ||||||||||| || || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 43033 TTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGG 43092 || || || ||| || || |||||||| | || |||||||| || || || |||||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 43093 TTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTT 43139 |||||| || | || | |||||||| || ||||| || || || Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATT 8935 Score = 161 bits (178), Expect = 3e-35 Identities = 261/373 (70%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 |||||| | ||| | ||| ||| | |||||| | || | || ||||| ||||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 42349 ATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCATTGCTGCCCC 42407 ||||| || | | | ||||| | ||| || || |||||||||| ||||| || Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTC-TGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 ||| || || || ||||| |||||||| || || ||||| || | | || || ||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 42468 CATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGAT 42527 ||||||||||||||| || || |||| ||||| ||||| ||||||| || | || Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 42528 CTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGT 42587 |||||||| | | || || ||| | ||||| || || ||||| || | |||| Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 42588 GTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCG 42647 | ||||||| | | ||||| | || ||| |||| || ||||||||| | || ||||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 42648 ACTTGGGATGAGG 42660 | || ||| || Sbjct 11912 TTTAGGTATGCGG 11900 Score = 105 bits (116), Expect = 2e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42654 GATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTT 42713 |||| | || ||||| ||| ||||||||||| || || || || || |||||||| || Sbjct 10478 GATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATT 10419 Query 42714 CCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGG 42773 | | ||||||| | || ||||||||||| || ||||| |||||| | || || || || Sbjct 10418 CATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGG 10359 Query 42774 TACGTTCAACTTCATG 42789 || |||||||||||| Sbjct 10358 AACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143505145266300