Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq14742 197 4e-46 >seq14742 Length=52551 Score = 197 bits (218), Expect = 4e-46 Identities = 273/373 (73%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 26491 CATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GCTGCTACT-CCTATT 26548 ||| |||| | |||||||| |||||| | | || ||| | || || | | |||| Sbjct 11903 CATACCTAAACGGTAAGATAATTCCCATTCACGACC--CATGTAGCAGCAAATACCTAAG 11960 Query 26549 AAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTG 26608 ||||||||| | | || | ||| || || || || ||||||| |||||| || | | Sbjct 11961 AAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAT 12020 Query 26609 CCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCT 26668 ||||||||| || ||||| ||||||| || || ||||| || | || || || || Sbjct 12021 GAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGCA 12080 Query 26669 CCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCT 26728 || || || || ||||||||||| | ||| || || |||||||||||||| || ||||| Sbjct 12081 CCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATCG 12140 Query 26729 ATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATGTAGTGGCTGCGAGTAA 26787 ||||| || || ||||| |||||||| || | || || ||| | ||| |||| | ||| Sbjct 12141 ATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACA-GAAGTAGCTGTTAATAA 12199 Query 26788 -GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAA 26846 | |||| ||||| | || |||||||| || | || | |||||| |||||||| |||| Sbjct 12200 TGTAGGG-ATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAA 12258 Query 26847 CCCACTCACAAAA 26859 ||| |||||||| Sbjct 12259 TCCATTCACAAAA 12271 Score = 170 bits (188), Expect = 6e-38 Identities = 247/349 (71%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 26009 AAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACA 26068 || || |||| ||| |||||||| || | ||||| | || || | ||| || ||||| Sbjct 8935 AATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 8994 Query 26069 ACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGA 26128 || ||||||| ||| | ||||| || | ||||| ||| || ||| || || || Sbjct 8995 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 9054 Query 26129 AAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGC 26188 || ||||| | |||||||| || |||||||| ||||| || ||||| ||||| ||||| Sbjct 9055 AAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTGA 9114 Query 26189 CCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAA 26248 || || || || || | || || | | || || ||||| || | || ||| Sbjct 9115 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGAA 9174 Query 26249 GTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCA 26308 || || || |||||||| |||| ||| | | ||||| || || ||||||||||| Sbjct 9175 GTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 9234 Query 26309 GCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGA 26357 ||| |||||||||||||| || || || || || |||||||| |||| Sbjct 9235 AACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAACGA 9283 Score = 80.6 bits (88), Expect = 8e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| | ||| ||||| || ||||||||||||||||||||||| | || | | Sbjct 8150 GACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATACCTAAG 8209 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | || ||||| || || || || | | || |||||| Sbjct 8210 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACTACT 8269 Query 25994 GACTGGTTAAAGTT 26007 || ||||| ||||| Sbjct 8270 GATTGGTTGAAGTT 8283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147683540052000