Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq14742 284 1e-71 >seq14742 Length=52551 Score = 284 bits (314), Expect = 1e-71 Identities = 273/350 (78%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 |||| |||||||| || ||||| || ||||||||||| ||||||||| | || || || | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| || ||||| || | |||||||| |||||||||||||| || || || || ||| Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 |||||||||||||||| | || ||| ||| | || ||||| ||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||| || |||||||| ||||| ||||| ||||| || ||| | |||||||| || || | Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 | ||||||||||| | | ||||||||| | ||||| ||||| || || | || | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTC 155820 || |||||| | ||| | ||||| |||||||||||| | ||||| ||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 251 bits (278), Expect = 8e-62 Identities = 275/363 (76%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| | ||| | |||| ||||| | || ||||||||||||||||| | ||||||||| Sbjct 12262 TGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCT 12203 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 | | | ||| || | ||||| |||| ||||| ||||||||||| || || Sbjct 12202 ACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGAT 12143 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 || |||||||||||||| || || ||||||| ||| | || || ||||||||||||||| Sbjct 12142 ATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCT 12083 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 ||||||||||| |||| |||||||| |||||| | || ||||| || ||||||||||| Sbjct 12082 GGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCT 12023 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 || || | ||||||||||| ||||| |||||||||| |||| | | || | ||||||| Sbjct 12022 TCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTC 11963 Query 155278 CTTATCGG-AATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCAT 155336 | | || | | | || ||| |||||| | |||||| | ||||||||| | || || Sbjct 11962 TTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTAT 11904 Query 155337 GCG 155339 ||| Sbjct 11903 GCG 11901 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 155335 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTC 155394 |||||||||||||| ||| || |||||||| ||||| | ||||| || |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 155395 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGT 155454 | | |||||| |||| ||||||||||||||||||| |||||| | ||||||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 155455 ACTTTTAACT 155464 ||||| |||| Sbjct 10357 ACTTTCAACT 10348 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155819 TCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACA 155878 ||||||||||||| || ||||| ||| || ||| || | || |||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 155879 TTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 155938 | | ||||| ||| | ||||||||||| |||||||||||||| || |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 155939 CTCTTGACCTTGCTGCTGCTGA 155960 | | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584716588111000