Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq14742 223 1e-53 >seq14742 Length=52551 Score = 223 bits (246), Expect = 1e-53 Identities = 275/371 (74%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 41147 CATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACT-CCTATTA 41205 |||||||| | ||| || | |||||| | | ||| ||| || || | | |||| | Sbjct 11903 CATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAAGA 11961 Query 41206 AAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGC 41265 | ||||| | || || | ||| || || || |||||||||| |||||| || | | Sbjct 11962 AGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGATG 12021 Query 41266 CGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTC 41325 |||||||| |||||||||||||||| || || ||||| || | ||||| ||||| | Sbjct 12022 AAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGCAC 12081 Query 41326 CAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTA 41385 |||| || || ||||| ||||| | ||| || || ||||| |||||||| || ||||| | Sbjct 12082 CAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATCGA 12141 Query 41386 TATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAAT 41444 |||| || || ||||| ||||| || ||||| ||||| ||| | ||||| |||| |||| Sbjct 12142 TATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACA-GAAGTAGCTGTTAATAAT 12200 Query 41445 GCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACC 41504 | || ||||| | ||||| |||||||| | ||||| ||||| || || ||||| | | Sbjct 12201 GTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAATC 12260 Query 41505 CAGTTACAAAA 41515 || | |||||| Sbjct 12261 CATTCACAAAA 12271 Score = 203 bits (224), Expect = 9e-48 Identities = 253/347 (73%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 40665 AAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATA 40724 || || || | ||| || |||||||| || ||||| | | || | ||| || |||| Sbjct 8935 AATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 8994 Query 40725 ACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGA 40784 || || ||||| | | |||||||||| | ||| |||||||| ||||| ||||| Sbjct 8995 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 9054 Query 40785 AATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGA 40844 || |||| | ||||||||||| ||||||||||| ||||| || || || |||| ||| Sbjct 9055 AAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTGA 9114 Query 40845 CCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAA 40904 || || || || || | ||| ||||| |||| || || || || || | || ||| Sbjct 9115 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGAA 9174 Query 40905 GTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCG 40964 || || | |||||||| |||| || || | ||||||||| || || ||||| || Sbjct 9175 GTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 9234 Query 40965 AGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGAC 41011 | ||| |||||||||||||| ||||||||||| || |||||||| || Sbjct 9235 AACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 109 bits (120), Expect = 2e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41015 CATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACC 41074 |||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 41075 GAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAA 41134 || ||||| | | |||||| || ||| |||| | |||||| | ||| || ||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 41135 TATCCATGGTCTCAT 41149 ||||| || | ||| Sbjct 10463 AATCCAAGGACGCAT 10477 Score = 86.0 bits (94), Expect = 2e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| |||| |||||||||| || |||||||| || |||||||||||||| ||||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 |||| | | ||| | | || |||||||| | || ||| | || ||| Sbjct 8204 CCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 8263 Query 40644 ACTACTGACTGGTTAAAGTT 40663 |||||||| ||||| ||||| Sbjct 8264 ACTACTGATTGGTTGAAGTT 8283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143674712589150