Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq14742 284 1e-71 >seq14742 Length=52551 Score = 284 bits (314), Expect = 1e-71 Identities = 273/350 (78%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 67493 GAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGAC 67552 ||| ||||| | |||||||||||||||||| | ||| | ||||||||||| || | || Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 67553 CACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTG 67612 || || | ||||| | ||||||||| | | |||||||||||||| || || || Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 67613 GAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTG 67672 |||||| || || || ||||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 67673 TCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGA 67732 ||||| ||||| || | ||| || || | ||||||||||| | ||| | ||| || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 67733 AGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCC 67792 ||| || | ||||||||||| ||| || | ||||||||| |||||||| || || || Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 67793 AAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGA 67842 | ||| ||||||||||||||||| ||||||||||| |||||||| |||| Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAACGA 9283 Score = 228 bits (252), Expect = 9e-55 Identities = 250/330 (76%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 67974 CGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATT-CCGAT 68032 |||||||| | ||||||||| | |||||| | |||||| ||| || | | | || | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAA 11959 Query 68033 AAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGT 68092 | ||||||| | || | | |||| |||| ||||| || || ||||||||||||| || Sbjct 11960 GAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 12019 Query 68093 TGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGC 68152 || |||||||| || || ||||| || | ||| || |||||||| ||||||||||||| Sbjct 12020 TGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAACAGC 12079 Query 68153 ACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATC 68212 |||||| ||||||||||| ||||| | | ||||| | ||| || || | |||||||| Sbjct 12080 ACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACCATC 12139 Query 68213 GATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAA 68272 |||||||||||||||||| || ||||| || |||||||| || | |||| | || Sbjct 12140 GATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGAAGTAGCTGTTAATAA 12199 Query 68273 GCAAGGAATCATCAACACACCGAACCAACC 68302 ||| ||||| | |||||||||||||| Sbjct 12200 TGTAGGGATCATGATAACACCGAACCAACC 12229 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 |||| |||| ||||| ||||| ||||| | |||||| | ||||||||||||||||| || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 67904 GAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACA 67963 || |||||||| | ||| || || || || | |||||||||||||| |||||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 67964 GATCCAAGGACGCAT 67978 |||||||||||||| Sbjct 10463 AATCCAAGGACGCAT 10477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/146 (76%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||| || | ||| | ||||||||||| || ||||||||||||||||||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 67413 CC-AAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GC 67468 || |||| || | ||| | ||||||||||||||| | | | || |||| | Sbjct 8204 CCTAAGT-TAGCACGGTTGATGATGTCTGCCCAAGT---GTTTAATACACGACCTTGAGA 8259 Query 67469 GTCAACGACGGATTGGTTGAAGTTGA 67494 |||||| || |||||||||||||||| Sbjct 8260 GTCAACTACTGATTGGTTGAAGTTGA 8285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566832216021000