Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq14742 538 4e-148 seq14161 98.7 1e-15 seq7727 82.4 9e-11 >seq14742 Length=52551 Score = 538 bits (596), Expect = 4e-148 Identities = 741/1031 (72%), Gaps = 4/1031 (0%) Strand=Plus/Minus Query 66578 AAATCCTTATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTC 66637 |||| | |||| || ||||||||||| || | |||||||| |||||||||| ||| Sbjct 38787 AAATATTGATTATAGAGCATTACCACGAGGTAATACTTCTTCAGGGAATACAAGACGTTC 38728 Query 66638 ATGCGGTTGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTT 66697 ||| ||||| || | |||| ||| ||||| | ||||||||| || | ||| || || Sbjct 38727 ATGTGGTTGGTCTTGCGCAGCCATCCAAGCACGGATACCTTCATTTAAAATAATATTTTT 38668 Query 66698 TGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTC 66757 ||||||||| || ||||| || || || || ||||| | || ||||| || || ||||| Sbjct 38667 TGTGTAGAAAGTTTCGAATTCCGGATCCTCAGCTGCACGAATTTCTTGTGAAACGAAGTC 38608 Query 66758 ATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCAT 66817 ||||||||| | || | ||| | |||| | ||| || | |||||||||| | Sbjct 38607 ATAAGCACGTAAATTTAAAGCTAACCCAACTACACCAATAGCTGACATCCAAAGACCTAC 38548 Query 66818 AACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAA 66877 ||||||||||| | ||| ||||| || | ||| | ||||| || |||| ||||| Sbjct 38547 AACAGGAACAAGAAGCATGAAGAAGTGAAGCCAACGTTTATTTGAGAAAGCAACCCCAAA 38488 Query 66878 GATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGA 66937 || ||||||||||| ||||| || || |||||||||||||||||||| |||| || | Sbjct 38487 AATTTGAGACCAGAAACGGTTCGCTGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGG 38428 Query 66938 GTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGT 66997 || ||||| ||| ||||| || |||||||||||| | | || || || || || Sbjct 38427 GTTAAATGCACGGAATGTGTTAGCACCGTCACCATCTTCAAATAATGTGTTTTCAACAGT 38368 Query 66998 AACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATG 67057 | |||| ||||| ||| | | | ||| | || | | |||||||||||||||||| || Sbjct 38367 AGCACCGTGAATAGCACATAATAGAGCAGCTCCTAAAACACCTGCTACACCCATCATGTG 38308 Query 67058 AAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGC 67117 || ||||| || |||||||||||||| ||||| | || | || ||| || || || || Sbjct 38307 GAATGGGTTTAAAGTCCAGTTATGGAAGCCTTGGAAAAATAAAATGAAACGGAAAATAGC 38248 Query 67118 TGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAA 67177 || || || ||| ||||| |||||||| | ||||| || | ||||| || | || Sbjct 38247 TGCTACACCAAAACTAGGAGCAAAAAACCAGCCAGATTGTCCTAATGGGTAAATTAAGAA 38188 Query 67178 GACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACC 67237 || ||||||||| | ||||| | ||||| |||||||||||||| ||||| | | Sbjct 38187 AACTGAAACAAAAACTGAAATAGGCGCCGAGAAAGCAATAGCATTGTATGGACGTAAATT 38128 Query 67238 GA-TGAGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGT 67296 | ||| ||| || | |||||| || || | ||| || ||||||| | |||||| || | Sbjct 38127 AACTGA-ACGAGCAATTTCAAATTGACGTAACATAAATCCAATTAAACCGAAAGATCCAT 38069 Query 67297 GGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAG 67356 | | || | ||| |||| || || || | ||| ||| || || || || || | Sbjct 38068 GTAAAGCAATAAATGTCCATAGACCACCTAATTGACACCAACGAGTAAAGTCACCTTGTG 38009 Query 67357 ACTCAGGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACA 67415 ||||| ||||| ||| | || || ||| ||| ||||| | ||||| ||||| ||| Sbjct 38008 CTTCAGGTCCCCATAAGAATAATAA-AGAGTGAGCCATACTGTTTGCAGGAGTTGAAACA 37950 Query 67416 GCCGCTGTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAG 67475 || ||||| | || ||| ||| || | ||| ||| || | || || |||||||| Sbjct 37949 GCTGCTGTTAAGAAGTTACAACCTTCTAAATATGAAGAAGCTAAACCATGTGTGTACCAT 37890 Query 67476 CTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAA 67535 ||| ||||| || |||||||||| ||| || |||| ||| | ||||||| || ||| Sbjct 37889 GATGTTACAAAAGTTGTACCAGTAAACCAACCTCCAAGTGCAAAATAAGCACAAGGGAAA 37830 Query 67536 AGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGG 67595 ||||| || || |||||||| ||||| ||||| || ||| | | ||||||||| | Sbjct 37829 AGAAGAAGACCTGACCAACCTACAAATACAAAACGGTCTTGACGTAACCAGTCATCTGCG 37770 Query 67596 ACATCGAACCA 67606 |||| ||||| Sbjct 37769 TCATCAAACCA 37759 Score = 298 bits (330), Expect = 6e-76 Identities = 275/348 (79%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 67974 GAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAAC 68033 ||| || || | |||||||||||| || || ||| | ||||||||||| |||||||| Sbjct 8934 GAATCCGTTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAAC 8993 Query 68034 GACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTG 68093 || ||||| ||||| | ||||||||| | ||||| ||||||||||| || || || || Sbjct 8994 TACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 9053 Query 68094 GAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTG 68153 |||||| | ||| || ||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 9054 GAAGATTAAACGTCCAAAGTAACCATGTGCAGCTACAATGTTGTATGTTTCTTCTTCTTG 9113 Query 68154 ACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGA 68213 |||||| ||||| || | ||| || || ||||||| |||||||| | | || || Sbjct 9114 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAAAGATGA 9173 Query 68214 AGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCC 68273 ||| || | ||||| ||||||||| ||| | || ||||||||||| |||||||| || Sbjct 9174 AGTTACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACC 9233 Query 68274 GAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACAC 68321 | ||| ||||| |||||||| || ||||||||||| |||||||| || Sbjct 9234 TAACATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAAAC 9281 Score = 268 bits (296), Expect = 1e-66 Identities = 289/376 (77%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 68455 CGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCA-AAGATACCAAT 68513 |||||||| | ||| || || | |||||||||||| |||||||| ||| | ||||| | Sbjct 11901 CGCATACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTA-GCAGCAAATACCTAA 11959 Query 68514 CAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAG 68570 | |||||| || |||| | |||| |||||||||| ||||| ||||||||||| | Sbjct 11960 GAAGAAGTGGCAAACGATT---AATTGGTAAGGACCACCGTTGTATAACCACTCATCTAA 12016 Query 68571 GGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAAC 68630 | || ||||||||||| || || || || | |||||| || ||||| |||||||||| Sbjct 12017 AGATGAAGCTTCCCAAATTGGGTAGAAATGTAAACCAATAGCGTTTGATGTAGGAACAAC 12076 Query 68631 AGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACC 68690 ||||||||| ||||||||||| || || | | |||||||| ||| || ||||||||||| Sbjct 12077 AGCACCAGAGATGATGTTGTTTCCGTATAATAATGAACCAGAAACTGGCTCACGAATACC 12136 Query 68691 ATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAA 68749 |||||| || || || || ||||||||||| |||| |||||| ||||| || |||| | Sbjct 12137 ATCGATATCAACTGGAGGTGCAGCGATGAAAGCGATGATGAATACAGA-AGTAGCTGTTA 12195 Query 68750 GCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAG 68809 | ||||||||||| | || ||||||||||| | ||| | ||||| || || || Sbjct 12196 ATAATGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTTTCAGTACTAG 12255 Query 68810 TCACCCATTCGCAGAA 68825 | | |||||| || || Sbjct 12256 TAATCCATTCACAAAA 12271 Score = 123 bits (136), Expect = 3e-23 Identities = 123/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 68325 CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACC 68384 |||| |||||||||| ||||| || || | |||||| | |||||||| |||||||| || Sbjct 10343 CATGAAGTTGAAAGTTCCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCC 10402 Query 68385 GAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACA 68444 || |||||||| | ||| ||||| | || |||||||| || |||||||| || ||| Sbjct 10403 GATAGGATAGATGATGAATACTGCAGTAGCAGCTGCAACTGGAGCAGAGTAAGCTACAGC 10462 Query 68445 GATCCAAGGACGCATACCAAGACGATAGG--AAAGTT 68479 |||||||||||||| | || | | |||| |||||| Sbjct 10463 AATCCAAGGACGCAT-CAAAAATGTTAGGTCAAAGTT 10498 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||| || |||| ||||||| ||| ||||| || ||| Sbjct 27922 CTCCCCAGGTAGGACTTGAACCTACGGCCTATCGGTTAACAGCCGACCGCTCTACCACTG 27981 Query 35571 AGCTACTGAGGAT 35583 ||||||||||||| Sbjct 27982 AGCTACTGAGGAT 27994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||| || | ||| | ||||||||||| || |||||||| ||||||||||||||| Sbjct 8144 TCAACAGACGCTAAGTCTAATGGGAAGTTGTGCGCATTACGCTCGTGCATAACTTCCATA 8203 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGT 67928 || || ||| ||||||| | ||||||||| || Sbjct 8204 CCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGT 8238 >seq14161 Length=2325 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||| ||||||||| |||||||||||| ||||||||||||||||| ||||| || ||| Sbjct 1207 CTCCCCGGGTAGGATTCGAACCTACGACCGATCGATTAACAGTCGATTGCTCTACCACTG 1266 Query 35571 AGCTACTGAGGA 35582 |||||| ||||| Sbjct 1267 AGCTACCGAGGA 1278 >seq7727 Length=1800 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||| |||||||| ||||||||| ||| ||||||||||||||| ||||| |||||| Sbjct 1641 CTCCCCGAGTAGGATTCGAACCTACGGCCATTCGATTAACAGTCGAATGCTCTACCGCTG 1582 Query 35571 AGCTA 35575 ||||| Sbjct 1581 AGCTA 1577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571938380217000