Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq11390 215 2e-51 seq312 197 5e-46 >seq11390 Length=1714 Score = 215 bits (238), Expect = 2e-51 Identities = 259/347 (75%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 40691 GCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCG 40750 ||||||||||| | ||| | || |||||||||||| | ||| ||||| ||| | Sbjct 644 GCGCGCCTTGAGCTTGCCGAAGGTGATGATCTGCGCGACGTGATCGCTGCCGTATTTC-G 586 Query 40751 GGTG-ACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGG 40809 || ||||| ||||||||||||| || ||| || ||||||||||||| |||| Sbjct 585 CCTGCACGTAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGG 526 Query 40810 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGT 40869 |||| || |||||||||||||| ||||| || ||||| | || ||| ||| || || | Sbjct 525 GCATCGAGACGCGCTCGGGGTTGAGGAAGCGTTCGAACAGCAGGCCGAGCTTCAAGGGAT 466 Query 40870 CGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAG 40929 |||| |||||||| ||| | |||| ||| |||||| || | ||||| ||||| | Sbjct 465 CGAGATCGGTGATGGTGAGCGCCCAGGCCACCGCCGAACCCGCGCCCGAGCCGCGCCCCG 406 Query 40930 GGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGT 40989 | || ||| || ||| | ||||| ||||| ||||||||| ||||||| ||||||| Sbjct 405 GCCCCACCGGGATGCCCTGTTCCTTGGCCCACTTGATGAAGTCGGCGACGATCAGGAAGT 346 Query 40990 ACGACGGGAA-GCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 41035 | | |||||| |||||||| | ||||| |||||||||||| | ||| Sbjct 345 A-GCCGGGAAAGCCCATCTTCACGATCACGTCGATCTCGTATTCGAG 300 Score = 93.3 bits (102), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 39825 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGA 39884 ||||| |||| |||||| ||||||||||||| || ||||| || |||||||| Sbjct 1465 TCCTTCGCCATCTCCTCGGCGATCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCTCCG 1406 Query 39885 CCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATG 39944 || ||| |||| || ||||||||||| || | || | ||| || |||||||||| |||| Sbjct 1405 CCAAGGCTGTATCCCGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGGTAGACGATG 1346 Query 39945 A 39945 | Sbjct 1345 A 1345 >seq312 Length=5289 Score = 197 bits (218), Expect = 5e-46 Identities = 280/391 (72%), Gaps = 7/391 (2%) Strand=Plus/Minus Query 40642 CGACCTGGA---AGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCT 40698 |||||||| ||||| | | |||||||||| | |||| || | || ||| |||| Sbjct 1141 CGACCTGGCCATAGGGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGGCGCGGGCCT 1082 Query 40699 TGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGT 40758 | | ||| | || ||||||||| |||| ||| |||||||| | ||||| Sbjct 1081 GCAGCGTGCCGAAGGTGATGATCTGCGCCACCTGCTCGCGGCCGTACTTGCCCTGGACGT 1022 Query 40759 ACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGA 40816 | ||||||||||| | || || || | || |||||||||||||| |||||||| || Sbjct 1021 AGCGGATCACCTCGTCGCGCCGGTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGA 964 Query 40817 CACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTC 40876 ||||||||||||||| ||||| |||||||| | ||| || || |||||||||||| Sbjct 963 CACGCGCTCGGGGTTGAGGAAGCGCTCGAACAGTAGCGCGAAGCGCATCGGGTCGAGGTC 904 Query 40877 GGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40936 ||| | | || |||||||| ||||| || || | ||||| || || || ||||| Sbjct 903 GGTCACCGTCAGCGAATAGGCGACGAGCGAGCCCGCGCCCGAGCCGCGGCCCGGCCCGAC 844 Query 40937 CCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGG 40996 | || | | |||||||||| ||||||||| ||||||| ||||||||| || Sbjct 843 GGGAATCCCTTGCGCCTTCGCCCACTTGATGAAGTCGGCGACGATGAGGAAGTAGCCGGG 784 Query 40997 GAAGCCCATCTGGATGATCATGTCGATCTCG 41027 ||| |||| || |||| | ||||| |||| Sbjct 783 GAACTTCATCCGGGTGATGACGTCGAGCTCG 753 Score = 91.5 bits (100), Expect = 5e-14 Identities = 249/373 (67%), Gaps = 24/373 (6%) Strand=Plus/Minus Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906 ||||||||||||| || ||||| ||||||||||||| ||||| | ||| || | || || Sbjct 1888 TCTTCTTGCCCATGGCGCGGCGCAGCAGGTCGGCCTCGCCGAGCGAGTAGCCCGACAGGA 1829 Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966 ||| || | || | ||| ||||||||||||| ||||| | ||||| || Sbjct 1828 TCTGCGCGATCTGCATCACCTGCTCCTGGTAGACGATGATGCCGTAGGTC---TC----- 1777 Query 39967 TCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGT-GATCGCCTGCTGCCCGTTC 40025 || | || | |||| || | || ||||| | || | | | | || |||| | Sbjct 1776 -CTTCAGCACCGGCTCGAGCAGC---GGATGGAT-GTAGTCGGGCACTTCGTGGCCGTGC 1722 Query 40026 TTCCGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGC 40084 || || | ||||| || | || || ||||||| || || ||||| ||||| Sbjct 1721 TTTCGCGCGCCGTAGACCGGGATG------TTCG-CCATCGGGCCGGGGCGGTAGAGCGC 1669 Query 40085 GACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCA-GCAGACGGAGCAGTGAGCGCA 40143 ||||| || ||||||||||||| ||| ||||| | | | | || | ||||| Sbjct 1668 GACGAGCGCGATGATGTCCTCGAAGCGGTCGGGCTTGATGTCGGC-GATCGCCTTGCGCA 1610 Query 40144 TCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACG 40203 | | || ||||||||||| || || || |||||| | ||| |||| ||| | Sbjct 1609 TGCCCATGCTTTCGAGCTGGAACACGCCGACGGTCTCGCCCTTCTGCAGGAGCTTGTAGG 1550 Query 40204 TCGCGGGGTCGTC 40216 | || |||||||| Sbjct 1549 TGGCAGGGTCGTC 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164813039043300