Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq11390 206 9e-49 seq312 201 4e-47 >seq11390 Length=1714 Score = 206 bits (228), Expect = 9e-49 Identities = 257/347 (74%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 40151 GCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCG 40210 ||||||||||| | ||| | || |||||||||||| | ||| ||||| ||| | Sbjct 644 GCGCGCCTTGAGCTTGCCGAAGGTGATGATCTGCGCGACGTGATCGCTGCCGTATTTC-G 586 Query 40211 GGTG-ACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGG 40269 || ||||| |||| |||||||| || ||| || ||||||||||||| |||| Sbjct 585 CCTGCACGTAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGG 526 Query 40270 GCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGT 40329 |||| || |||||||||||||| |||||||| ||||| | || ||| ||| || || | Sbjct 525 GCATCGAGACGCGCTCGGGGTTGAGGAAGCGTTCGAACAGCAGGCCGAGCTTCAAGGGAT 466 Query 40330 CGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAG 40389 |||| |||||||| ||| | |||| ||| |||||| || | ||||| ||||| | Sbjct 465 CGAGATCGGTGATGGTGAGCGCCCAGGCCACCGCCGAACCCGCGCCCGAGCCGCGCCCCG 406 Query 40390 GGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGT 40449 | || ||| || || | ||||| ||||| ||||||||| ||||||| ||||||| Sbjct 405 GCCCCACCGGGATGCCCTGTTCCTTGGCCCACTTGATGAAGTCGGCGACGATCAGGAAGT 346 Query 40450 ACGACGGGAAC-CCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40495 | | |||||| ||||||| | ||||| |||||||||||| | ||| Sbjct 345 A-GCCGGGAAAGCCCATCTTCACGATCACGTCGATCTCGTATTCGAG 300 Score = 93.3 bits (102), Expect = 1e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 39285 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGA 39344 ||||| |||| |||||| ||||||||||||| || ||||| || |||||||| Sbjct 1465 TCCTTCGCCATCTCCTCGGCGATCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCTCCG 1406 Query 39345 CCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 || ||| |||| || ||||||||||| || | || | |||||| |||||||||| ||| Sbjct 1405 CCAAGGCTGTATCCCGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGGTAGACGAT 1347 >seq312 Length=5289 Score = 201 bits (222), Expect = 4e-47 Identities = 283/392 (72%), Gaps = 9/392 (2%) Strand=Plus/Minus Query 40102 CGACCTGGA---AGGGCTTGTCGAGCACGCGAGCCG-CGTCCTTCATCGCGTTGCGCGCC 40157 |||||||| ||||| | | |||||||| |||| |||| || | || ||| ||| Sbjct 1141 CGACCTGGCCATAGGGCATCTGCAGCACGCG-GCCGACGTCGCGCAGCACGGCGCGGGCC 1083 Query 40158 TTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACG 40217 | | | ||| | || ||||||||| |||| ||| |||||||| | |||| Sbjct 1082 TGCAGCGTGCCGAAGGTGATGATCTGCGCCACCTGCTCGCGGCCGTACTTGCCCTGGACG 1023 Query 40218 TACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGG 40275 || |||| |||||| | || || || | || |||||||||||||| |||||||| | Sbjct 1022 TAGCGGATCACCTCGTCGCGCCGGTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCG 965 Query 40276 ACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGT 40335 |||||||||||||||| |||||||||||||| | ||| || || ||||||||||| Sbjct 964 ACACGCGCTCGGGGTTGAGGAAGCGCTCGAACAGTAGCGCGAAGCGCATCGGGTCGAGGT 905 Query 40336 CGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGA 40395 |||| | | || |||||||| ||||| || || | ||||| || || || |||| Sbjct 904 CGGTCACCGTCAGCGAATAGGCGACGAGCGAGCCCGCGCCCGAGCCGCGGCCCGGCCCGA 845 Query 40396 CCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACG 40455 | | ||| | | |||||||||| ||||||||| ||||||| ||||||||| | Sbjct 844 CGGGAATCCCTTGCGCCTTCGCCCACTTGATGAAGTCGGCGACGATGAGGAAGTAGCCGG 785 Query 40456 GGAACCCCATCTGGATGATCATGTCGATCTCG 40487 ||||| |||| || |||| | ||||| |||| Sbjct 784 GGAACTTCATCCGGGTGATGACGTCGAGCTCG 753 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||||||||| || ||||| ||||||||||||| || || | ||| || | || || Sbjct 1888 TCTTCTTGCCCATGGCGCGGCGCAGCAGGTCGGCCTCGCCGAGCGAGTAGCCCGACAGGA 1829 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 ||| || | || | ||||||||||||||||| ||| Sbjct 1828 TCTGCGCGATCTGCATCACCTGCTCCTGGTAGACGAT 1792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163293331904550